RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR6245b-5p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

12892596

End:

12892616

Strand:

-

Sequence:

UUUAAUAGAACCGACACCUAU

Length:

21

precursor sequence:

AUAGGUGUCGGUUUUUUAAUAGAACCGACACCUAUACUUAUAUACUUAUAUUAUAGGUGUCGGUUCUAGAGAAAAAACCGGCACCUAUAUAUAUGUGCCGGUUUUUUCUGUGGAACCAAUACCUAUAAUAUAAGUAUAGGUGUCGGUUCUAUUAAAAACCGAUACCUAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

92

NEP:

33.58%

LE_num:

80

LEP:

29.2%

ME_num:

100

MEP:

36.5%

HE_num:

2

HEP:

0.73%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.82

Avg Expression:

1.81

Tip: osa-miR6245b-5p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-4.012999029548030.0294555259016774