RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2232c_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

24306549

End:

24306569

Strand:

-

Sequence:

UCCAACGAUCGGAAAUGAUUU

Length:

21

precursor sequence:

UACCUCGAUCAUAAUACUAAAUCGUUUUUAUUCGUUGGAUCUAGUUAGACAGAAUGGGUAUUGUUAGAUCCAACGAUCGGAAAUGAUUUGAUACCAUGUGGUAUCAUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

18

NEP:

6.57%

LE_num:

39

LEP:

14.23%

ME_num:

201

MEP:

73.36%

HE_num:

16

HEP:

5.84%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf

Tau :

0.75

Avg Expression:

7.00

Tip: Osa-miRN2232c_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-1.817976051462263.59956307681237e-05
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA1.527303972974270.00882311418477657