Chr:
Chr2
Start:
16227807
End:
16227827
Strand:
+
Sequence:
AGAAGAGAGAGAGUACAGCCU
Length:
21
precursor sequence:
UGUACAUCGAGGCUAAAGGAAGAAGAGAGAGAGUACAGCCUUAGUUCAGAUCACAUAUGACUAUCUUUUGCGAGUCUGAUCGAUACUCUGAUGAAGGCUGUACCCUCUCUCUUCUUCUCUUAGCUUCUUGAUGCUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
7
NEP:
2.55%
LE_num:
LEP:
1.46%
ME_num:
MEP:
33.21%
HE_num:
HEP:
62.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.90
Avg Expression:
6980.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 5.38904841331159 | 4.3378085654504e-08 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -2.15656068829699 | 0.0106573869900629 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.46666119331067 | 3.98561051063195e-72 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.08625115203966 | 3.33827962340604e-06 |
| 5 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -2.37290548840324 | 0.000198056569754705 |