Chr:
Chr3
Start:
27624400
End:
27624420
Strand:
+
Sequence:
UCCAACGAUCGGAAAUGAUUU
Length:
21
precursor sequence:
CCGGUACCUCACGGUAUCAAAUUAUUUCUGUUCAUUGGAUCUAAUUGGAUGGGAUGGACAUUGUUAGAUCCAACGAUCGGAAAUGAUUUGGUAUCGUAAGAUACCGGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
16
NEP:
5.84%
LE_num:
LEP:
12.77%
ME_num:
MEP:
75.91%
HE_num:
HEP:
5.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.75
Avg Expression:
7.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -1.64389031581971 | 0.000349754393615185 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 1.58022695105204 | 0.00784070760290304 |