RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2327_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

6140527

End:

6140547

Strand:

-

Sequence:

UCAGCUGUUUGGGAGGAUUGA

Length:

21

precursor sequence:

CAAUAUUAUGCCUCAACUAUUCAGCUGUUUGGGAGGAUUGAAGGUGUUUUUUUUUCUAAUUUCAAUGAGCAGAAGGUUUAGUUGGAUCUAUGUUCUUGAUACCUCUCAAUCCUAUAAACUGAGCCAUGGAUAACAUAAUGCCUUUUUCGAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

209

NEP:

76.28%

LE_num:

12

LEP:

4.38%

ME_num:

27

MEP:

9.85%

HE_num:

26

HEP:

9.49%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.91

Avg Expression:

20.10

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miRN2327_PmiREN is not a differential expression ncRNA.