Chr:
Chr3
Start:
24510613
End:
24510633
Strand:
-
Sequence:
CAAAUCGUUUCUGAUCGUUGG
Length:
21
precursor sequence:
CGUCCAAUACCUCAUGGUAUCAAAUCGUUUCUGAUCGUUGGAUCUAACAAUGUCCAUCCUGCUUAGCUGCUAGAUCCAAUGAUCAAAAAUGAUUUAGUACCAUGAUAUACCGGUAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
63
NEP:
22.99%
LE_num:
LEP:
23.72%
ME_num:
MEP:
52.19%
HE_num:
HEP:
1.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.91
Avg Expression:
5.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.20463945622039 | 1.20620727235909e-21 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 4.36106747180766 | 0.0386622615270345 |