RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR11342-5p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

23289397

End:

23289417

Strand:

-

Sequence:

CGAGACGAAUCUAACGAGAUA

Length:

21

precursor sequence:

UCCGGGCUAUUAAAUAGCCCUCCGAAAUCUUGCUAUUUAGCAGUAUUAAACGUAGAUUACCGACAAAACUCAUUCCAUAACCCCUGGGCUAUUUUGCGAGACGAAUCUAACGAGAUAUAUUAAUCCAUGAUUUGUUGCAGUGAUGCUACAUUGAUCAUUCGCUAACUAUGGAUUAAUAUACCUCGUUAGAUUCGUCUCGCAAAAUAGCCUAGGGGUUAUGGAAUGGGUUUUGUCAGUAAUCUACGUUUAAUACUCUUAGAUAGCAAGAUUUUGGAGAGCUAUUUAAUAGCCCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

47

NEP:

17.15%

LE_num:

78

LEP:

28.47%

ME_num:

149

MEP:

54.38%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_base

Tau :

0.84

Avg Expression:

3.65

Tip: osa-miR11342-5p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-2.385789330740356.74608281591237e-12