Chr:
Chr12
Start:
25611723
End:
25611743
Strand:
+
Sequence:
CAAAUCGUUUCUGAUCGUUGG
Length:
21
precursor sequence:
CAUAAAGUAUCUCGAAGUACCAAAUCGUUUCUGAUCGUUGGAUCUAUCUAGGUAGGAUGGACAUUGUUAAAUCCAAUGAUCGAAAAUGAUUUGAUACUGUGAGGUACCGGUAGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
57
NEP:
20.8%
LE_num:
LEP:
19.34%
ME_num:
MEP:
57.3%
HE_num:
HEP:
2.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.82
Avg Expression:
5.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.18918498187996 | 7.28114128082801e-22 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 5.76399444234983 | 0.00160678556852999 |