Chr:
Chr2
Start:
28768227
End:
28768250
Strand:
+
Sequence:
AAAUCCCUUAUAUUGUAGGACGGA
Length:
24
precursor sequence:
ACUCCCUCCGUCCCAUAAUAUAAGGGAUUUUGAGUUUUUUUUACGUUUGACCACUCGUUUUAUUCAAUUUUUUUUAAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCUAUAUUACUUUAAGCACAACUUUCCGUUUUUUAUAUUUGCAAAAAAAAUUUAAAUAAGAUGAGCGGUCAAACGUUAAAAGCAAAAACCUAAAAUCCCUUAUAUUGUAGGACGGAGAGAGUAAGUCAUUUUAGCAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
38
NEP:
13.87%
LE_num:
LEP:
24.45%
ME_num:
MEP:
53.65%
HE_num:
HEP:
8.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.85
Avg Expression:
15.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.64691024508315 | 1.79958647706839e-20 |