Chr:
Chr12
Start:
11288156
End:
11288175
Strand:
-
Sequence:
AGGGCUAUAGCUCAGUUCGG
Length:
20
precursor sequence:
UCUAACCACUGAGUUAAGUAGGCAAUUUAUCACCACAAAGGAAGACCCUUUACUUCGAUUGAUUAUAGAUCGAAUCCUUUUUAUAAGCAAAUACCGCUUAGUUAUUGGUAUGUUAUUAUAGUAAACAGAUCAAAGGAUAUCCUCUACUAUUAGAGAAUAUUCAUCUUGACAAGAAAUUCUCUAUAUAUUAAGAUAUCUCUGACAAGGGCUAUAGCUCAGUUCGGUAGAGCAACUCGUUUACACGUGCGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
27.01%
HE_num:
HEP:
72.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.87
Avg Expression:
751.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 1.88656952532033 | 3.95587993331489e-14 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | -1.75481092031736 | 0.0100592183265211 |
| 3 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -1.80600824282758 | 0.0155199835804698 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.24756814034146 | 3.56499204750214e-46 |
| 5 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -2.57672268848788 | 3.06716693013805e-56 |
| 6 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 2.00372716565473 | 2.65962608368953e-11 |
| 7 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 2.85714302019705 | 8.80641018667623e-14 |
| 8 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 1.14630123628504 | 0.000175207087373577 |
| 9 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 1.1331868821444 | 0.0035262987982465 |