Chr:
Chr12
Start:
25472900
End:
25472920
Strand:
+
Sequence:
UUUGGCUUGCAACGUUUGACC
Length:
21
precursor sequence:
UUCUACUCCCUCCGUUGAGAUUUGGCUUGCAACGUUUGACCACUCAUCUUAUUCAAAUUACUUUUAUAAAUAUAAAAAACGAAAAGUUGUGCUUAAAGUACUGUAAAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUUAAAUUUUUUUGAAUAAGACGAGUGGUCAAAUGUUGCAAGCAAAAACUCAAAAUCCCUUAUAUUAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
45
NEP:
16.42%
LE_num:
LEP:
10.22%
ME_num:
MEP:
28.47%
HE_num:
HEP:
44.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.75
Avg Expression:
93.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.06409566253646 | 0.0155771211597609 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 1.17140188753283 | 1.48041791366412e-10 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.36177532668868 | 3.9222636769612e-09 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.56927406102995 | 9.08431093149903e-11 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.50210739444798 | 6.37107791196066e-11 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.21350225571769 | 1.72309680913393e-05 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 10.5237283338295 | 2.29514252720054e-16 |