RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2232d_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

6711930

End:

6711950

Strand:

-

Sequence:

UCCAACGAUCGGAAAUGAUUU

Length:

21

precursor sequence:

AUUUCCUCUAAUCCAACAAAAUCGUUUCCGAUUGUUGGAUCUAACAAUACCCAUCCUGUCUAGCUAGGUCCAACGAUCGGAAAUGAUUUAGUACCAUGAGGUACCGAUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

50

NEP:

18.25%

LE_num:

84

LEP:

30.66%

ME_num:

139

MEP:

50.73%

HE_num:

1

HEP:

0.36%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf

Tau :

0.86

Avg Expression:

4.54

Tip: Osa-miRN2232d_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-5.64950354711350.000104645642972021