RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
osa-miR5801c-3p	miRbase	Chr8	20930517	20930537	+	N/N
osa-miR6245b-5p	miRbase	Chr12	12892596	12892616	-	Y/N
osa-miR6245b-3p	miRbase	Chr12	12892477	12892497	-	N/N
Osa-miR397b	PmiREN	Chr2	3280864	3280885	-	Y/Y
Osa-miR397a	PmiREN	Chr6	28489798	28489818	+	Y/Y
Osa-miRN2228b	PmiREN	Chr8	4435491	4435511	-	N/Y
Osa-miRN2232d	PmiREN	Chr9	6711930	6711950	-	Y/N
Osa-miRN2232e	PmiREN	Chr1	26307378	26307398	+	Y/N
Osa-miRN2232b	PmiREN	Chr6	8837476	8837496	+	Y/N
Osa-miRN2232c	PmiREN	Chr7	24306549	24306569	-	Y/N
Osa-miR11340	PmiREN	Chr6	7715339	7715361	+	N/N
Osa-miR2871	PmiREN	Chr4	8340904	8340924	+	Y/N
Osa-miRN2232j	PmiREN	Chr12	25611723	25611743	+	Y/N
Osa-miR2876	PmiREN	Chr6	17008984	17009005	-	Y/N
Osa-miRN2203b	PmiREN	Chr1	7857738	7857758	+	Y/N
Osa-miRN2203a	PmiREN	Chr1	25180654	25180674	+	Y/N
Osa-miR3979	PmiREN	Chr11	19480162	19480182	+	Y/Y
Osa-miRN2309c	PmiREN	Chr3	33124849	33124869	-	N/Y
Osa-miRN2309b	PmiREN	Chr10	20405654	20405674	-	N/Y
Osa-miRN2309a	PmiREN	Chr7	29070631	29070652	+	Y/N
Osa-miRN2332	PmiREN	Chr9	8961276	8961296	-	N/N
Osa-miRN2354	PmiREN	Chr12	24297192	24297212	+	Y/N
Osa-miRN2355	PmiREN	Chr1	20077203	20077223	+	N/N
Osa-miRN2356	PmiREN	Chr2	20358270	20358290	-	N/N
Osa-miR1846h	PmiREN	Chr2	26544128	26544147	-	Y/N
Osa-miR818b	PmiREN	Chr2	4007276	4007301	+	N/N
Osa-miRN2351	PmiREN	Chr12	24395829	24395849	-	N/Y
Osa-miRN2352	PmiREN	Chr12	18628386	18628406	-	N/N
Osa-miR818a	PmiREN	Chr2	28768227	28768250	+	Y/N
Osa-miR1846g	PmiREN	Chr11	21603039	21603059	-	Y/Y
Osa-miR1846f	PmiREN	Chr10	6857378	6857397	-	Y/N
Osa-miR1846e	PmiREN	Chr9	13211472	13211495	-	Y/N
Osa-miR11337l	PmiREN	Chr4	14006148	14006168	+	N/N
Osa-miR2118l	PmiREN	Chr11	7810747	7810768	-	Y/Y
Osa-miR2118i	PmiREN	Chr11	7810261	7810282	-	Y/N
Osa-miRN2321	PmiREN	Chr2	10642797	10642817	+	N/Y
Osa-miRN2320	PmiREN	Chr1	19145141	19145161	-	N/Y
Osa-miRN2278	PmiREN	Chr2	20259532	20259552	+	Y/Y
Osa-miR3982	PmiREN	Chr11	1384746	1384766	-	Y/Y
Osa-miRN2327	PmiREN	Chr5	6140527	6140547	-	N/Y
Osa-miRN2326	PmiREN	Chr5	13984508	13984528	-	N/Y
Osa-miR11337p	PmiREN	Chr9	15244712	15244732	+	Y/N
Osa-miR11337q	PmiREN	Chr12	4776554	4776575	-	Y/N
Osa-miR11337r	PmiREN	Chr2	6143086	6143107	-	Y/N
Osa-miR11337s	PmiREN	Chr3	31459681	31459702	-	Y/N
Osa-miR11337t	PmiREN	Chr7	2096379	2096400	-	Y/N
Osa-miR5801d	PmiREN	Chr12	1024710	1024729	+	Y/N
Osa-miR5801e	PmiREN	Chr1	18014203	18014222	-	Y/N
Osa-miR5801j	PmiREN	Chr8	20607786	20607806	+	N/N
Osa-miR5801k	PmiREN	Chr5	16046868	16046887	+	Y/N
Osa-miR5801h	PmiREN	Chr6	28888188	28888208	+	N/N
Osa-miR5801i	PmiREN	Chr7	21370921	21370941	+	N/N
Osa-miR5801n	PmiREN	Chr4	21147864	21147884	+	Y/N
Osa-miR1878	PmiREN	Chr9	16555575	16555598	+	Y/N
Osa-miR5801l	PmiREN	Chr8	26861955	26861975	-	Y/N
Osa-miR5801m	PmiREN	Chr3	1824711	1824731	-	N/N
Osa-miR5801r	PmiREN	Chr6	26032953	26032972	+	N/N
Osa-miRN2195a	PmiREN	Chr1	7494658	7494678	+	N/N
Osa-miR5801p	PmiREN	Chr4	6449699	6449720	+	Y/N
Osa-miR5801q	PmiREN	Chr12	8866352	8866371	+	N/N
Osa-miRN2268a	PmiREN	Chr12	22206661	22206681	-	Y/N
Osa-miRN2268b	PmiREN	Chr2	10627710	10627730	+	Y/N
Osa-miRN2373c	PmiREN	Chr8	5571357	5571377	+	N/N
Osa-miR2090	PmiREN	Chr1	38764362	38764387	-	Y/N
Osa-miR2905	PmiREN	Chr1	24415931	24415952	+	Y/N
Osa-miR172b	PmiREN	Chr1	42923746	42923765	-	Y/N
Osa-miRN2219	PmiREN	Chr1	8729125	8729145	+	Y/N
Osa-miR393b	PmiREN	Chr4	34931961	34931981	-	Y/Y
Osa-miRN2335	PmiREN	Chr10	3687409	3687429	-	N/Y
Osa-miR1429	PmiREN	Chr8	2036951	2036974	-	N/N
Osa-miR11343a	PmiREN	Chr12	16169140	16169160	+	Y/N
Osa-miRN2232f	PmiREN	Chr9	5670106	5670126	-	Y/N
Osa-miRN2178a	PmiREN	Chr12	19677360	19677380	+	Y/N
Osa-miR169p	PmiREN	Chr8	7641337	7641357	+	Y/N
Osa-miRN2178c	PmiREN	Chr7	4112681	4112701	-	Y/N
Osa-miRN2178b	PmiREN	Chr12	25472900	25472920	+	Y/N
Osa-miR169f	PmiREN	Chr2	18558462	18558481	-	Y/N
Osa-miR169a	PmiREN	Chr3	35782429	35782449	+	Y/N
Osa-miRN2267b	PmiREN	Chr12	14534590	14534610	+	N/Y
Osa-miRN2283b	PmiREN	Chr11	24938808	24938828	+	Y/N
Osa-miRN2232a	PmiREN	Chr3	27624400	27624420	+	Y/N
Osa-miRN221f	PmiREN	Chr6	1095084	1095103	-	Y/N
Osa-miR3980a	PmiREN	Chr2	24319574	24319596	-	N/N
Osa-miR3980b	PmiREN	Chr2	24319574	24319596	-	N/N
Osa-miRN2325	PmiREN	Chr4	18612501	18612521	+	N/N
Osa-miR529a	PmiREN	Chr2	16227807	16227827	+	Y/N
Osa-miRN221a	PmiREN	Chr12	11288156	11288175	-	Y/N
Osa-miRN2232h	PmiREN	Chr3	24510613	24510633	-	Y/N
Osa-miR11339ad	PmiREN	Chr1	42099895	42099915	+	N/N
Osa-miRN2232i	PmiREN	Chr12	24283404	24283424	-	Y/Y
Osa-miRN2313	PmiREN	Chr12	21182132	21182152	-	N/Y
Osa-miRN2324	PmiREN	Chr4	17663211	17663231	+	N/Y
Osa-miR11339ag	PmiREN	Chr6	23690441	23690461	+	N/N
Osa-miRN2298b	PmiREN	Chr9	11105872	11105892	-	Y/N
Osa-miRN2314	PmiREN	Chr10	13966518	13966538	+	N/Y
Osa-miRN2298a	PmiREN	Chr6	15278119	15278139	-	Y/N
Osa-miRN2260a	PmiREN	Chr1	38771457	38771477	-	Y/N
Osa-miRN2276e	PmiREN	Chr8	13368415	13368435	-	Y/N
Osa-miRN2303b	PmiREN	Chr6	14075614	14075634	+	N/Y
Osa-miRN2260c	PmiREN	Chr7	1154950	1154970	-	Y/N
Osa-miRN221c	PmiREN	Chr3	31819312	31819331	-	Y/N
Osa-miR2275d	PmiREN	Chr8	3736892	3736912	-	Y/Y
Osa-miR2275e	PmiREN	Chr8	1204908	1204929	+	N/N
Osa-miR2275f	PmiREN	Chr8	4403927	4403947	-	N/N
Osa-miR2275g	PmiREN	Chr8	4404028	4404049	-	N/Y