RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2260c_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

1154950

End:

1154970

Strand:

-

Sequence:

UUAAGGACCGUAGAAUUGCUC

Length:

21

precursor sequence:

GCUCAUAUUUACAUACCAGAGCAAUUUUAUGGUUCUUGAGUAGGUACUAUGAGGUACCAUUUUUUCUAUUAUAAAUUUGGUACCUCUUGGUAUCUAGGUACUAUGAUGUACCAAAUUUUACACUAAAAUUUUGGUACCUCAUGGUACCUCCUUAAGGACCGUAGAAUUGCUCUUUUCAGAAUCUCCACCAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

41

NEP:

14.96%

LE_num:

47

LEP:

17.15%

ME_num:

143

MEP:

52.19%

HE_num:

43

HEP:

15.69%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.90

Avg Expression:

17.16

Tip: Osa-miRN2260c_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-3.056787292754780.0104997272142893