RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miRN2260c	PmiREN	Chr7	1154950	1154970	-	Y/N
Osa-miRN221c	PmiREN	Chr3	31819312	31819331	-	Y/N
Osa-miR2275d	PmiREN	Chr8	3736892	3736912	-	Y/Y
Osa-miR2275e	PmiREN	Chr8	1204908	1204929	+	N/N
Osa-miR2275f	PmiREN	Chr8	4403927	4403947	-	N/N
Osa-miR2275g	PmiREN	Chr8	4404028	4404049	-	N/Y
Osa-miR2275a	PmiREN	Chr8	1205021	1205041	+	N/N
Osa-miR2275b	PmiREN	Chr8	1202505	1202525	+	N/N
Osa-miR2275c	PmiREN	Chr7	16719850	16719870	-	Y/Y
Osa-miR444c	PmiREN	Chr4	23053533	23053555	-	Y/N
Osa-miR444b	PmiREN	Chr2	22303630	22303652	-	Y/N
Osa-miR2275h	PmiREN	Chr8	4384923	4384944	-	N/Y
Osa-miR2275i	PmiREN	Chr7	16719646	16719666	-	Y/Y
Osa-miR444d	PmiREN	Chr2	30463327	30463349	-	Y/N
Osa-miRN2222	PmiREN	Chr12	13410165	13410185	+	Y/Y
Osa-miRN221b	PmiREN	Chr12	5611048	5611067	-	Y/N
Osa-miRN2276f	PmiREN	Chr8	3982102	3982122	-	Y/N
Osa-miRN2316	PmiREN	Chr11	20564657	20564677	+	N/N
Osa-miRN2329	PmiREN	Chr6	9654155	9654175	+	N/Y
Osa-miRN2276d	PmiREN	Chr5	14765998	14766018	-	Y/N
Osa-miR156k	PmiREN	Chr9	18289183	18289202	-	N/N
Osa-miR156j	PmiREN	Chr6	26554835	26554855	+	Y/Y
Osa-miR156h	PmiREN	Chr6	27388145	27388164	+	N/N
Osa-miR5143	PmiREN	Chr1	8417119	8417142	-	Y/N
Osa-miR156f	PmiREN	Chr8	21478232	21478252	+	Y/Y
Osa-miR156d	PmiREN	Chr2	4512974	4512994	-	Y/Y
Osa-miRN2303a	PmiREN	Chr6	13311859	13311879	+	N/Y
Osa-miRN2319	PmiREN	Chr12	24317901	24317921	+	Y/Y
Osa-miRN2283a	PmiREN	Chr11	4416847	4416867	+	Y/N
Osa-miRN2255	PmiREN	Chr11	27317151	27317171	+	N/Y
Osa-miRN2257	PmiREN	Chr11	1020771	1020791	-	Y/N
Osa-miRN2164a	PmiREN	Chr12	18944486	18944506	-	Y/N
Osa-miRN2259	PmiREN	Chr5	25503014	25503034	+	Y/N
Osa-miRN2258	PmiREN	Chr11	19306983	19307003	+	N/N
Osa-miR11343e	PmiREN	Chr3	2591086	2591107	-	N/N
Osa-miR11343d	PmiREN	Chr2	1861077	1861098	-	Y/N
Osa-miR11343c	PmiREN	Chr9	22883315	22883336	-	N/N
Osa-miR11343b	PmiREN	Chr7	25160299	25160320	-	N/N
Osa-miRN2317	PmiREN	Chr12	21907561	21907581	-	N/Y
Osa-miRN2164d	PmiREN	Chr2	34255126	34255146	-	Y/N
Osa-miRN2164e	PmiREN	Chr6	7075522	7075542	-	Y/N
Osa-miR5504	PmiREN	Chr10	17228178	17228197	-	Y/N
Osa-miR812d	PmiREN	Chr3	26459657	26459676	+	Y/N
Osa-miR812e	PmiREN	Chr3	14377303	14377322	-	Y/N
Osa-miR812a	PmiREN	Chr10	406243	406264	+	Y/N
Osa-miR812b	PmiREN	Chr2	1936345	1936370	-	Y/N
Osa-miR812c	PmiREN	Chr11	3604005	3604024	+	Y/N
Osa-miR812l	PmiREN	Chr10	13067089	13067110	-	Y/N
Osa-miR812o	PmiREN	Chr11	3914105	3914127	-	Y/N
Osa-miR812h	PmiREN	Chr3	1164963	1164986	-	Y/N
Osa-miR812k	PmiREN	Chr6	19697439	19697458	-	Y/N
Osa-miR812t	PmiREN	Chr9	16214838	16214859	+	Y/N
Osa-miR812u	PmiREN	Chr11	18534922	18534942	+	Y/N
Osa-miR812w	PmiREN	Chr11	26272551	26272572	-	Y/N
Osa-miR812q	PmiREN	Chr4	23192972	23192993	-	Y/N
Osa-miR812r	PmiREN	Chr8	21686719	21686740	-	Y/N
Osa-miR812s	PmiREN	Chr9	8642575	8642596	-	Y/N
Osa-miR812x	PmiREN	Chr4	12430353	12430374	+	Y/N
Osa-miR812y	PmiREN	Chr8	27821214	27821237	+	Y/N
Osa-miR812z	PmiREN	Chr5	20977759	20977780	-	Y/N
Osa-miR1122b	PmiREN	Chr2	977334	977354	-	N/N
Osa-miR1122a	PmiREN	Chr10	18022132	18022152	+	N/N
Osa-miR2122	PmiREN	Chr2	8715263	8715286	+	N/N
Osa-miR2120	PmiREN	Chr2	9175883	9175908	+	N/N
Osa-miR531a	PmiREN	Chr8	1220400	1220421	-	Y/N
Osa-miR531b	PmiREN	Chr1	833967	833989	-	Y/N
Osa-miR531c	PmiREN	Chr11	26930692	26930713	+	Y/N
Osa-miR531d	PmiREN	Chr2	18431799	18431820	+	Y/N
Osa-miR2275j	PmiREN	Chr8	3736692	3736712	-	Y/Y
Osa-miR11337n	PmiREN	Chr7	19603623	19603643	+	Y/N
Osa-miR398	PmiREN	Chr7	14598627	14598647	-	Y/Y
Osa-miR399d	PmiREN	Chr6	1561791	1561812	+	Y/N
Osa-miR399l	PmiREN	Chr6	20890950	20890970	+	Y/Y
Osa-miR399j	PmiREN	Chr4	28873196	28873215	+	Y/N
Osa-miRN2347	PmiREN	Chr6	4789408	4789428	+	N/N
Osa-miRN2346	PmiREN	Chr5	6099540	6099560	+	N/Y
Osa-miRN2345	PmiREN	Chr4	21226048	21226068	-	N/Y
Osa-miRN2344	PmiREN	Chr3	27635975	27635995	+	N/N
Osa-miRN2343	PmiREN	Chr3	26841668	26841688	+	N/Y
Osa-miRN2342	PmiREN	Chr2	18533094	18533114	+	N/N
Osa-miRN2341	PmiREN	Chr2	12299897	12299917	+	N/N
Osa-miRN2340	PmiREN	Chr1	13885903	13885923	-	N/Y
Osa-miR418	PmiREN	Chr2	35182640	35182663	-	N/N
Osa-miRN2349	PmiREN	Chr9	6623796	6623816	+	N/Y
Osa-miRN2348	PmiREN	Chr7	17339271	17339291	-	N/N
Osa-miR164d	PmiREN	Chr2	33143631	33143650	-	Y/N
Osa-miR159d	PmiREN	Chr1	6563767	6563786	-	Y/Y
Osa-miR159e	PmiREN	Chr1	9760719	9760738	-	Y/Y
Osa-miR159c	PmiREN	Chr1	6556059	6556078	-	Y/Y
Osa-miR159a	PmiREN	Chr1	6693269	6693288	+	Y/N
Osa-miR5821a	PmiREN	Chr12	24605434	24605454	+	N/N
Osa-miR5821b	PmiREN	Chr6	21881275	21881295	+	N/N
Osa-miRN2357	PmiREN	Chr3	32294553	32294573	+	N/N
Osa-miRN2350	PmiREN	Chr11	24771256	24771276	+	N/N
Osa-miRN2353	PmiREN	Chr12	18625651	18625671	+	N/N
Osa-miRN2269	PmiREN	Chr1	4397489	4397508	+	N/N
Osa-miRN2261	PmiREN	Chr5	20173002	20173022	-	Y/N
Osa-miRN2262	PmiREN	Chr2	31449188	31449207	+	Y/N
Osa-miRN2263	PmiREN	Chr12	2361885	2361905	+	Y/N
Osa-miRN2264	PmiREN	Chr9	13604993	13605013	+	N/Y
Osa-miR1846a	PmiREN	Chr10	529306	529329	+	Y/N
Osa-miRN2266	PmiREN	Chr2	720919	720939	+	Y/N
Osa-miR5799	PmiREN	Chr1	3400995	3401018	-	N/N
Osa-miRN2358	PmiREN	Chr3	32278135	32278155	-	N/Y
Osa-miRN2359	PmiREN	Chr4	13137356	13137376	-	N/Y
Osa-miR156m	PmiREN	Chr8	21491234	21491254	+	Y/Y
Osa-miRN2265	PmiREN	Chr11	11438936	11438957	+	N/N
Osa-miR9664	PmiREN	Chr11	7342344	7342364	-	Y/N
Osa-miR1869	PmiREN	Chr4	21644960	21644982	+	N/N
Osa-miRN2337	PmiREN	Chr12	21000978	21000998	+	N/Y
Osa-miR1863	PmiREN	Chr12	4869464	4869489	+	Y/Y
Osa-miR1865	PmiREN	Chr3	34000705	34000726	+	Y/N
Osa-miRN2373b	PmiREN	Chr5	27494437	27494457	+	N/N
Osa-miR167g	PmiREN	Chr3	3347692	3347713	+	Y/N
Osa-miR167f	PmiREN	Chr10	14723125	14723146	-	Y/N
Osa-miR167d	PmiREN	Chr7	4166373	4166394	-	Y/N
Osa-miR167j	PmiREN	Chr1	32686181	32686202	-	Y/N
Osa-miR167h	PmiREN	Chr12	25480628	25480649	+	Y/N
Osa-miR395a	PmiREN	Chr4	31805504	31805523	-	Y/N
Osa-miR395b	PmiREN	Chr4	31805343	31805363	-	Y/N
Osa-miR395c	PmiREN	Chr4	31805203	31805224	-	Y/N
Osa-miR395e	PmiREN	Chr4	31804922	31804943	-	Y/N
Osa-miR395f	PmiREN	Chr8	3299895	3299915	+	Y/N
Osa-miR395g	PmiREN	Chr4	31804642	31804662	-	Y/N
Osa-miR395h	PmiREN	Chr8	3299226	3299246	+	Y/N
Osa-miR395j	PmiREN	Chr8	3299560	3299581	+	Y/N
Osa-miR395l	PmiREN	Chr8	3300071	3300091	+	Y/N
Osa-miR395m	PmiREN	Chr4	32622093	32622113	+	Y/N
Osa-miR395o	PmiREN	Chr4	32622429	32622450	+	N/N
Osa-miR11337h	PmiREN	Chr1	29451486	29451506	-	Y/N
Osa-miRN2364	PmiREN	Chr6	28324494	28324514	+	N/Y
Osa-miR5795c	PmiREN	Chr4	11400635	11400656	-	Y/N
Osa-miR11337i	PmiREN	Chr2	32851465	32851485	-	Y/N
Osa-miRN2256	PmiREN	Chr4	20988745	20988765	+	N/Y
Osa-miR11337j	PmiREN	Chr3	32923087	32923107	+	Y/N
Osa-miRN2310	PmiREN	Chr8	17848878	17848899	-	Y/N
Osa-miR11337k	PmiREN	Chr3	4737493	4737513	-	Y/N
Osa-miRN2311	PmiREN	Chr6	992257	992278	+	Y/N
Osa-miRN2312	PmiREN	Chr6	24608747	24608767	-	Y/Y