Chr:
Chr12
Start:
13410165
End:
13410185
Strand:
+
Sequence:
UCAGAUUGAGCCGAGUUUAAA
Length:
21
precursor sequence:
UUCUUCUAAUUGAUUGCAAUUAAACUCGGCUCAAUCUCUUUUUUCAGAUUGAGCCGAGUUUAAAUAGAUCUUUCUAUACUAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
16
NEP:
5.84%
LE_num:
LEP:
13.5%
ME_num:
MEP:
56.93%
HE_num:
HEP:
23.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.91
Avg Expression:
137.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -1.53388951613757 | 0.000641286985296813 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | -1.97586034756633 | 0.0275407257069712 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -3.68820576959385 | 8.35209105796772e-124 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -3.20119532797515 | 7.70428760739163e-83 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -5.70500386875271 | 4.09841977624092e-112 |
| 6 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -6.03978216654357 | 3.22497116496038e-37 |
| 7 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 3.99967565363021 | 1.14120884255238e-08 |
| 8 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 3.69995940066366 | 2.0879160665762e-63 |
| 9 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.21254317142954 | 0.00186468907495529 |
| 10 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -1.26621645457818 | 0.000334050558401111 |
| 11 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -1.83811440755289 | 5.325332596974e-06 |
| 12 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.96485881192728 | 0.00372394129522762 |
| 13 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -2.04097649091591 | 0.00202813905218431 |