Chr:
Chr2
Start:
33143631
End:
33143650
Strand:
-
Sequence:
UGGAGAAGCAGGGCACGUGC
Length:
20
precursor sequence:
GAGGGGUGAGCAAACCGUGCUGGAGAAGCAGGGCACGUGCUCGACGGCGGGGCUGGCUGGCCGGCCGGCUUGCAGCAUGUGCGCUCCUUCUCCAGCAUGGCUUCUCGCCCCGUCGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
14
NEP:
5.11%
LE_num:
LEP:
5.11%
ME_num:
MEP:
40.88%
HE_num:
HEP:
48.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.83
Avg Expression:
363.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -2.44979165306757 | 0.000231136073682733 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -2.33295128969114 | 2.69008887988208e-06 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -2.44053111053317 | 2.43650529154706e-05 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -2.11571083483519 | 1.03744262979202e-07 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -2.40065482551683 | 8.08543513792542e-08 |
| 6 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 3.07831155289052 | 0.0157412369945148 |