| SRR3140955 | leaf | "45C, 12h" | 1.41 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 5.70 | MC |
| SRR6810106 | panicle | panicle | 2.16 | MC |
| SRR7058097 | leaf | rice_mock | 30.89 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 0.36 | MC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 19.39 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 0.55 | MC |
| SRR2154074 | seed | Nipponbare_seed | 5.23 | MC |
| SRR2154072 | seed | Rathuwee_seed | 3.21 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 4.13 | MC |
| SRR2154070 | seed | Guangluai4_seed | 1.66 | MC |
| SRR2154071 | seed | KDM105_seed | 1.40 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 1.72 | MC |
| SRR1061625 | panicle | Heat Stress | 6.02 | MC |
| SRR1061622 | flag_leaf | Normal | 3.51 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 1.29 | MC |
| SRR1061620 | flag_leaf | Normal | 3.51 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 9.74 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 1.52 | MC |
| SRR6810105 | panicle | panicle | 2.26 | MC |
| SRR447135 | shoot | As(III) 20 uM | 5.44 | MC |
| SRR447134 | shoot | As(III) 80 uM | 3.59 | MC |
| SRR447133 | shoot | As(III) 20 uM | 3.71 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 18.90 | MC |
| SRR1849765 | leaf | Control 30min | 5.40 | MC |
| SRR1849767 | leaf | Control 30min | 7.25 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 4.22 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 12.18 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 7.93 | MC |
| SRR6498701 | leaf | "WT, Control" | 5.04 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 6.78 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 5.60 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 2.29 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 6.92 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 3.72 | MC |
| SRR1849773 | leaf | Control 120min | 7.69 | MC |
| SRR1849772 | leaf | Control 120min | 6.71 | MC |
| SRR1849771 | leaf | Control 120min | 9.89 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 3.16 | MC |
| SRR7058096 | leaf | rice_mock | 19.73 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.23 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 2.44 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 6.62 | MC |
| SRR6365689 | seedling | Wild type | 1.11 | MC |
| SRR447136 | shoot | As(III) 80 uM | 8.16 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 5.59 | MC |
| SRR10704060 | leaf | Glyphosate | 24.31 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 6.96 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 0.77 | MC |
| SRR2154075 | seed | Taipei309_seed | 3.96 | MC |
| SRR3140952 | leaf | "45C, 0h" | 3.68 | MC |
| SRR4098208 | root | No treatment | 7.16 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.33 | MC |
| SRR4098205 | seedling | Heat (50C) | 10.03 | MC |
| SRR6810104 | flag_leaf | flag_leaf | 2.33 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 0.30 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 0.28 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 0.91 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 1.07 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 0.72 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 2.57 | MC |
| SRR10704059 | leaf | Glyphosate | 4.11 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 1.22 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.74 | MC |
| SRR6498699 | leaf | "WT, Control" | 6.81 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 6.03 | MC |
| SRR2646852 | panicle | FP | 0.83 | MC |
| SRR2646853 | panicle | FP | 2.30 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.74 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 29.50 | MC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 22.38 | MC |
| SRR2646854 | panicle | SP | 1.79 | MC |
| SRR2646855 | panicle | SP | 4.35 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 10.01 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 1.03 | MC |
| SRR4098203 | seedling | No treatment | 6.98 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 0.28 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 2.09 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.78 | MC |
| SRR6365690 | seedling | Wild type | 1.05 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 0.30 | MC |
| SRR6365692 | panicle | Wild type | 9.79 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 6.25 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 2.91 | MC |
| SRR6810101 | seedling | seedling | 13.70 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 0.65 | MC |
| SRR1849784 | root | Control 120min | 9.41 | MC |
| SRR6365691 | panicle | Wild type | 9.16 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 1.60 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 2.17 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 3.17 | MC |
| SRR3110556 | shoot | shoot control | 25.58 | MC |
| SRR1061616 | panicle | Normal | 2.92 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 8.63 | MC |
| SRR6810103 | flag_leaf | flag_leaf | 2.54 | MC |
| SRR1061618 | flag_leaf | Normal | 0.46 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 2.73 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 1.37 | MC |
| SRR3140954 | leaf | "45C, 12h" | 9.76 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 1.49 | MC |
| SRR2544786 | embryo | dry seed | 0.58 | MC |
| SRR4098172 | seedling | Cold (4C) | 11.22 | MC |
| SRR6810102 | seedling | seedling | 19.51 | MC |
| SRR10956502 | panicle | WT | 3.03 | MC |
| SRR10956501 | panicle | WT | 3.94 | MC |
| SRR1740023 | seedling | IR64-Control | 1.22 | MC |
| SRR1740025 | seedling | PK-Control | 0.97 | MC |
| SRR1740024 | seedling | N22-Control | 0.85 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 5.94 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 6.58 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 2.92 | MC |
| SRR3110557 | shoot | shoot treated | 26.35 | MC |