Chr:
Chr12
Start:
25480628
End:
25480649
Strand:
+
Sequence:
UGAAGCUGCCAGCAUGAUCUGA
Length:
22
precursor sequence:
AGUGGUGCACCACAAGUUGGUGAAGCUGCCAGCAUGAUCUGAUGAUGAUGAUGAUCCACCUCUCUCAUCUGUGUUCUUGAUUAAUUACGGAUCAAUCGAUCAGGUCAUGCUGUAGUUUCAUCUGCUGGUUGGGAGCACAGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
0
LEP:
0.0%
ME_num:
0
MEP:
0.0%
HE_num:
274
HEP:
100.0%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.86
Avg Expression:
17305.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.05394457646097 | 3.91445046638008e-08 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.95933112696047 | 2.80964531634823e-31 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.89508728437892 | 3.64554823161567e-49 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.53647477516721 | 5.44980180051878e-45 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.25271311973969 | 0.00858628491826738 |