Chr:
Chr7
Start:
16719646
End:
16719666
Strand:
-
Sequence:
AGGAUUAGAGGGAACUGAACC
Length:
21
precursor sequence:
UAUAUGUGCCAUUUGAAAUGAGGAUUAGAGGGAACUGAACCUUUGAUGAAGAUCAGAAGGUUCAGUUUCCAUAUCUCACCUUGAAUGGCCCAUCUGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
135
NEP:
49.27%
LE_num:
LEP:
14.6%
ME_num:
MEP:
17.52%
HE_num:
HEP:
18.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.95
Avg Expression:
780.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -4.33898375444678 | 3.58768522889238e-14 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 5.6747650549119 | 6.92886548265862e-07 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -4.70740411318945 | 1.47773270223948e-08 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.19834605596248 | 2.73103217232119e-24 |