Chr:
Chr7
Start:
14598627
End:
14598647
Strand:
-
Sequence:
UGUGUUCUCAGGUCGCCCCUG
Length:
21
precursor sequence:
AACGCGAGGGAGUUCCUACAGGGGCGAGCUGGGAACACACGGUGAUGAGGCGGUCUGGUCUUUCGUGUGUUCUCAGGUCGCCCCUGCCGGGACUCUCUGGUUGAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
19
NEP:
6.93%
LE_num:
LEP:
8.03%
ME_num:
MEP:
40.15%
HE_num:
HEP:
44.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.95
Avg Expression:
2645.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.87515396041598 | 0.00109999645874053 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.92229291393028 | 0.00167415437644644 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.98840154111926 | 5.80551887748117e-05 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.60932339412523 | 0.016846700385354 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.44238282123579 | 0.000249775091808581 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -1.60835684690815 | 0.0150123062821494 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 2.25867143071878 | 1.36593705004465e-26 |
| 8 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.55902692502912 | 2.62389377888176e-09 |
| 9 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.32450468530424 | 3.47418979529256e-06 |
| 10 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 2.0488936010702 | 2.51672775228603e-05 |