RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2258_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

19306983

End:

19307003

Strand:

+

Sequence:

AACACUUCCGUCAAUUCUUGA

Length:

21

precursor sequence:

UUCACCCUGUUCUCACUUUUAACACUUCCGUCAAUUCUUGACCGUUUUCCGUCUGUCUUGAUUGCUAUUGACCCAACCACGCACGCGAUAUGAUGUUUCUACCCUCACAAGUACAAGUAGAAUGCAUGAUAAUGAGGGUAGAAAUAUCAUAUCGCUUGCGUGGCUAGAUUAAUAGCGAUCAAGACGAACGAAAAACGAUCCAGAAUUGACGGAAGUGUUAAAAAUGGGAACGGGAUGAACU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

182

NEP:

66.42%

LE_num:

23

LEP:

8.39%

ME_num:

64

MEP:

23.36%

HE_num:

5

HEP:

1.82%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.87

Avg Expression:

5.40

Tip: Osa-miRN2258_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miRN2258_PmiREN is not a differential expression ncRNA.