RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2340_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

13885903

End:

13885923

Strand:

-

Sequence:

UGACCUAUAAGUGGAUUCGCG

Length:

21

precursor sequence:

CCGUGUAAGUGGCUAACCCGUAAAACUCACUUAUAAGCUAAAAUAAGCCGUAAACCCGCUUAUUUUGACCUAUAAGUGGAUUCGCGGCUGACUCACUUACACCCCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

113

NEP:

41.24%

LE_num:

78

LEP:

28.47%

ME_num:

82

MEP:

29.93%

HE_num:

1

HEP:

0.36%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.96

Avg Expression:

17.21

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miRN2340_PmiREN is not a differential expression ncRNA.