Chr:
Chr1
Start:
833967
End:
833989
Strand:
-
Sequence:
CUCGCCGGGGCUGCGUGCCGCCA
Length:
23
precursor sequence:
GGUGGCGCCGCCGAGCCUUGCUCGCCGGGGCUGCGUGCCGCCAUAGCUGGUGCGCAUCCCCGUCGAGCGUUGCUCGACGGUGCCCUAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
114
NEP:
41.61%
LE_num:
LEP:
4.38%
ME_num:
MEP:
43.43%
HE_num:
HEP:
10.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.62
Avg Expression:
14.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -4.41829572371914 | 5.16803274018823e-67 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.86866367463136 | 2.73752202666535e-66 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -5.94131938146596 | 8.14503603947187e-102 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -5.80853468332694 | 1.92616591327238e-19 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 4.21181866073428 | 5.53731299987975e-206 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -3.79402170543116 | 4.17963623745179e-11 |
| 7 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -4.93556630393723 | 3.35868911152979e-23 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.25238349290136 | 0.00329609537571299 |