Chr:
Chr2
Start:
31449188
End:
31449207
Strand:
+
Sequence:
UAUUAUAAGACGUUUUGACU
Length:
20
precursor sequence:
AAUAUACUCCCUCCGUUUCAUAUUAUAAGACGUUUUGACUUUGAUAAAAGUCAAAUUGUUUCGAGUUUGAUUAAGUUUAUAGACAAAUAGUAAUAUUUAUACUAACAAAUUAGUUUCAUCAAAUCACUAAUUGAAUAUAUUUUCAUAAUAAAUUUUUCUUGGUUUGAAAAUAUUACUAUUUUUCUAUAAACUUGGUCAAACUUAAAGCAGUUUGACUUUGACUAAAGUCAAAACGUAUUAUAACCUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
18
NEP:
6.57%
LE_num:
LEP:
13.5%
ME_num:
MEP:
55.47%
HE_num:
HEP:
24.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.62
Avg Expression:
15.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.56202432533304 | 0.0062590547473822 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.37090666101843 | 0.0327636196789036 |
| 3 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -1.77329798025531 | 3.35512782308974e-10 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.15125867349345 | 0.035384427955249 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.45094520322469 | 0.0212792650230305 |