RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR812h_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

1164963

End:

1164986

Strand:

-

Sequence:

AGACGGAUGAUUAAAGUUGGACAC

Length:

24

precursor sequence:

UAAGUGCAAUCAUGAGUUUCGCCCAACUUUAAUCAUCUGUUUUAUUUGAACUUUUUAUAAAUAGUAUUUUUAUUGUUAUGAGAUUAUAAAAUUUAAAUAAGACGGAUGAUUAAAGUUGGACACGAAAACUCAUGGCUACACUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.36%

LE_num:

3

LEP:

1.09%

ME_num:

135

MEP:

49.27%

HE_num:

135

HEP:

49.27%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.80

Avg Expression:

182.94

Tip: Osa-miR812h_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late1.068713793107291.44262208154703e-07
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA-1.633183988531740.0236826195936714