Chr:
Chr1
Start:
6693269
End:
6693288
Strand:
+
Sequence:
CUUGGAUUGAAGGGAGCUCU
Length:
20
precursor sequence:
GGGAGAAGAAGAAGAAGACGAGCUCCCUUCGAUCCAAUCCAGGAGAGGAAGUGGUAGGAUGCAGCUGCCGGUUCAUGGAUACCUCUGCAGUGCAUGUCGUAGGCUUGCACUUGCAUGGGUUUGCAUGACCCGGGAGAUGAACCCACCAUUGUCUUCCUCUUAUGCUUGGAUUGAAGGGAGCUCUACACCUCUCUCUCUCUCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
2
NEP:
0.73%
LE_num:
LEP:
0.73%
ME_num:
MEP:
23.72%
HE_num:
HEP:
74.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.83
Avg Expression:
1308.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -2.01635512219107 | 0.0139552373569962 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.39761990615516 | 5.55617513421817e-07 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.60467267226385 | 0.000346111812575735 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.19923689989276 | 0.0186463173229029 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.15101569120083 | 0.0211757501587443 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -2.02065906193094 | 0.0167522037809113 |
| 7 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -1.88555440539388 | 0.0306698683931606 |
| 8 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.4659104799928 | 0.00274772966815426 |