RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR11343d_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

1861077

End:

1861098

Strand:

-

Sequence:

UGAAUGUGGGCAAUGCUAGAAU

Length:

22

precursor sequence:

CGUUUUAUAAUGUAAGUCAUUCUAGCAUUGCUCACAUUCAUAUGGAUGUUAAUGAAUCUAUACAUAUAUAUAUAUUUAUAUUCAUUAACAUCCAUAUGAAUGUGGGCAAUGCUAGAAUGACUUACAUUAUGAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

32

NEP:

11.68%

LE_num:

46

LEP:

16.79%

ME_num:

196

MEP:

71.53%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf_sheath

Tau :

0.60

Avg Expression:

3.02

Tip: Osa-miR11343d_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late-1.595244331560640.00751377934785037