Chr:
Chr9
Start:
8642575
End:
8642596
Strand:
-
Sequence:
GAACAGUCAAACGUUGGACACG
Length:
22
precursor sequence:
AAGACAAACUUAGGUUUCCGUAUCAAACGUUUGACCGUCCGUCUUAUUUGAAAAAAAAUAUGAAAAAAAAUUAAAAAAACAAGUCACGCAUAAAGUAUUAAUCAUGUUUUAUCAUCUAACAAUAAUAAAAAUACUAAUUAUAAAAUAAUUUCAUAUAAGACGAACAGUCAAACGUUGGACACGAAAACCCAGGGUUUGUCUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
21
NEP:
7.66%
LE_num:
LEP:
9.49%
ME_num:
MEP:
79.56%
HE_num:
HEP:
3.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.76
Avg Expression:
4.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 1.02678127411363 | 0.00899401671092401 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.31156531566449 | 0.00994648155289532 |
| 3 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -4.14285810590452 | 5.74295177587693e-12 |