RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR396g	miRbase/PmiREN	/	Chr6	5300640	5300660	-	Y/Y
osa-miR396h	miRbase		Chr2	32841771	32841791	+	Y/Y
Osa-miR396d	miRbase/PmiREN	/	Chr2	27728695	27728715	-	Y/Y
osa-miR1863b	miRbase		Chr12	4867560	4867583	+	N/N
osa-miR1863b.2	miRbase		Chr12	4867585	4867607	+	Y/N
osa-miR2907a	miRbase		Chr3	23598586	23598607	+	N/N
osa-miR2907b	miRbase		Chr11	7278060	7278081	+	N/N
osa-miR2907c	miRbase		Chr11	11906618	11906639	+	N/N
osa-miR2907d	miRbase		Chr12	12115126	12115147	+	N/N
osa-miR2918	miRbase		Chr6	31091929	31091949	-	N/N
osa-miR2919	miRbase		Chr5	9936948	9936966	-	N/N
osa-miR2920	miRbase		Chr7	28405591	28405613	-	N/N
osa-miR2921	miRbase		Chr11	22213557	22213580	+	N/N
osa-miR2922	miRbase		Chr10	22684298	22684317	-	N/N
osa-miR2923	miRbase		Chr11	21507100	21507121	+	N/N
osa-miR2924	miRbase		Chr1	11894404	11894424	+	N/N
osa-miR2925	miRbase		Chr1	25801074	25801092	+	N/N
osa-miR2926	miRbase		Chr6	11402646	11402665	+	N/N
osa-miR2927	miRbase		Chr1	37098129	37098151	+	N/N
osa-miR2928	miRbase		Chr2	6536024	6536043	+	N/N
osa-miR2929	miRbase		Chr10	1774340	1774360	-	N/N
osa-miR2930	miRbase		Chr6	8376863	8376884	+	N/N
osa-miR2931	miRbase		Chr6	1893817	1893836	+	N/N
osa-miR2932	miRbase		Chr10	10556709	10556727	+	N/N
osa-miR395x	miRbase		Chr4	32623127	32623147	+	N/N
osa-miR395y	miRbase		Chr8	3299895	3299915	+	Y/N
osa-miR812k	miRbase		none	none	none	none	Y/Y
osa-miR812l	miRbase		none	none	none	none	Y/Y
Osa-miR812m	miRbase/PmiREN	/	Chr8	20574810	20574833	+	Y/Y
osa-miR1862f	miRbase		none	none	none	none	N/Y
Osa-miR1862g	miRbase/PmiREN	/	Chr4	20340401	20340422	-	N/Y
osa-miR3979-5p	miRbase		Chr11	19480162	19480181	+	Y/Y
osa-miR3979-3p	miRbase		Chr11	19480234	19480253	+	Y/Y
osa-miR3980a-5p	miRbase		none	none	none	none	N/N
osa-miR3980a-3p	miRbase		none	none	none	none	N/N
osa-miR3980b-5p	miRbase		none	none	none	none	N/N
osa-miR3980b-3p	miRbase		none	none	none	none	N/N
osa-miR812n-5p	miRbase		Chr8	14108258	14108281	-	Y/N
Osa-miR812n	miRbase/PmiREN	/	Chr8	14108083	14108106	-	Y/N
osa-miR812o-5p	miRbase		none	none	none	none	Y/N
osa-miR812o-3p	miRbase		none	none	none	none	N/N
osa-miR3981-5p	miRbase		Chr5	4302836	4302856	+	N/N
osa-miR3981-3p	miRbase		Chr5	4302897	4302917	+	N/N
Osa-miR2873b	miRbase/PmiREN	/	Chr2	18974876	18974896	+	N/N
osa-miR3982-5p	miRbase		Chr11	1384931	1384951	-	N/N
osa-miR3982-3p	miRbase		Chr11	1384745	1384765	-	Y/Y
osa-miR5071	miRbase		Chr8	4114070	4114090	-	N/N
osa-miR5072	miRbase		Chr6	17458738	17458759	-	N/N
osa-miR5073	miRbase		Chr8	19020505	19020527	+	Y/N
osa-miR5074	miRbase		Chr12	12674526	12674546	+	N/N
osa-miR5075	miRbase		Chr11	7878346	7878366	-	N/N
osa-miR5076	miRbase		Chr1	43208632	43208653	-	Y/N
osa-miR5077	miRbase		Chr3	14094764	14094782	+	N/N
osa-miR5078	miRbase		Chr5	21907872	21907892	-	N/N
osa-miR5079a	miRbase		Chr6	28181418	28181439	+	N/N
osa-miR5080	miRbase		Chr10	2322030	2322050	-	N/N
osa-miR5081	miRbase		Chr7	16898	16919	-	N/N
osa-miR5082	miRbase		Chr11	1286653	1286676	+	Y/N
osa-miR5083	miRbase		Chr1	41010583	41010602	-	Y/N
osa-miR5143a	miRbase		Chr1	8417119	8417142	-	Y/N
osa-miR5144-5p	miRbase		Chr1	25326778	25326798	-	Y/N
osa-miR5144-3p	miRbase		Chr1	25326399	25326419	-	Y/Y
osa-miR5145	miRbase		Chr1	40622693	40622716	-	Y/N
osa-miR5146	miRbase		Chr1	22418344	22418367	+	N/N
osa-miR5147	miRbase		Chr2	17049866	17049886	-	Y/N
osa-miR2863c	miRbase		Chr2	29869574	29869597	+	Y/Y
Osa-miR5148a	miRbase/PmiREN	/	Chr3	9968955	9968980	-	Y/N
Osa-miR5148b	miRbase/PmiREN	/	Chr6	27436699	27436724	+	Y/N
Osa-miR5148c	miRbase/PmiREN	/	Chr11	2813208	2813233	-	Y/N
osa-miR5149	miRbase		Chr3	29756528	29756549	-	Y/N
Osa-miR5150	miRbase/PmiREN	/	Chr4	18470798	18470823	+	Y/N
osa-miR5150-3p	miRbase		Chr4	18470833	18470856	+	Y/N
osa-miR5151	miRbase		Chr5	3661606	3661627	-	Y/N
osa-miR5152-5p	miRbase		Chr5	28910228	28910248	-	N/N
osa-miR5152-3p	miRbase		Chr5	28910050	28910070	-	N/N
osa-miR5153	miRbase		Chr5	2518523	2518546	+	Y/N
osa-miR5154	miRbase		Chr6	5263517	5263540	+	Y/N
osa-miR5155	miRbase		Chr8	9179597	9179620	-	N/N
osa-miR5156	miRbase		Chr8	16956068	16956091	-	N/N
osa-miR5157a-5p	miRbase		Chr8	21476224	21476247	-	N/N
osa-miR5157a-3p	miRbase		Chr8	21476175	21476198	-	N/N
osa-miR5157b-5p	miRbase		Chr8	21489226	21489249	-	N/N
osa-miR5157b-3p	miRbase		Chr8	21489177	21489200	-	N/N
osa-miR5158	miRbase		Chr8	23993600	23993623	+	Y/N
Osa-miR5159	miRbase/PmiREN	/	Chr11	11920762	11920785	+	Y/N
osa-miR5160	miRbase		Chr12	2039483	2039504	-	N/N
Osa-miR5161	miRbase/PmiREN	/	Chr12	12083796	12083817	+	N/N
osa-miR5162	miRbase		Chr12	16421208	16421231	+	N/N
Osa-miR5337a	miRbase/PmiREN	/	Chr4	5621974	5621994	+	N/N
osa-miR5338	miRbase		Chr5	15185821	15185841	-	N/Y
osa-miR5339	miRbase		Chr6	29362783	29362803	-	N/N
osa-miR5340	miRbase		Chr2	5683388	5683410	-	Y/N
osa-miR5484	miRbase		Chr2	7796932	7796952	-	Y/N
osa-miR5485	miRbase		Chr3	22088162	22088182	-	N/N
Osa-miR5486	miRbase/PmiREN	/	Chr3	26838901	26838921	+	Y/N
Osa-miR5487	miRbase/PmiREN	/	Chr4	17569172	17569192	+	N/Y
Osa-miR5488	miRbase/PmiREN	/	Chr12	18039140	18039162	+	N/Y
Osa-miR5489	miRbase/PmiREN	/	Chr11	23057503	23057525	-	N/Y
Osa-miR5490	miRbase/PmiREN	/	Chr11	25091568	25091590	-	N/Y
Osa-miR5491	miRbase/PmiREN	/	Chr9	6896428	6896448	+	N/N
Osa-miR5492	miRbase/PmiREN	/	Chr6	16973826	16973846	+	N/N
osa-miR5493	miRbase		Chr2	22898270	22898290	+	Y/N
Osa-miR5494	miRbase/PmiREN	/	Chr1	2317365	2317387	-	N/Y
Osa-miR5495	miRbase/PmiREN	/	Chr2	20298341	20298363	+	N/N
Osa-miR5496	miRbase/PmiREN	/	Chr2	22859779	22859799	-	N/Y
Osa-miR5497	miRbase/PmiREN	/	Chr3	32506021	32506043	+	N/Y
osa-miR5498	miRbase		Chr4	11830808	11830828	-	N/N
Osa-miR5499	miRbase/PmiREN	/	Chr4	17241810	17241832	+	N/N
osa-miR5500	miRbase		Chr4	27731077	27731098	+	N/N
osa-miR5501	miRbase		Chr4	28838215	28838235	+	N/N
osa-miR5502	miRbase		Chr5	28979946	28979967	-	N/N
Osa-miR5503	miRbase/PmiREN	/	Chr12	5657913	5657934	+	N/N
osa-miR5504	miRbase		Chr10	17228177	17228197	-	Y/N
Osa-miR5505	miRbase/PmiREN	/	Chr12	13389180	13389203	+	N/N
osa-miR5506	miRbase		Chr12	15164817	15164837	-	N/Y
osa-miR5507	miRbase		Chr12	21019888	21019908	-	N/Y
Osa-miR5508	miRbase/PmiREN	/	Chr6	638325	638345	-	Y/N
osa-miR5509	miRbase		Chr11	24258785	24258805	-	Y/Y
osa-miR5510	miRbase		Chr12	19128008	19128028	-	N/N
osa-miR5511	miRbase		Chr4	14653021	14653041	-	N/Y
osa-miR5512a	miRbase		Chr4	18387082	18387102	+	Y/N
Osa-miR5513	miRbase/PmiREN	/	Chr3	34008118	34008138	+	Y/N
osa-miR2275c	miRbase		Chr7	16719848	16719870	-	Y/Y
osa-miR5514	miRbase		Chr2	22840171	22840191	+	N/Y
osa-miR5515	miRbase		Chr4	17244231	17244251	+	Y/Y
Osa-miR5516a	miRbase/PmiREN	/	Chr5	13979428	13979448	-	N/Y
Osa-miR5517	miRbase/PmiREN	/	Chr6	24618693	24618715	-	N/N
osa-miR5518	miRbase		Chr7	9526436	9526456	+	N/N
Osa-miR5519	miRbase/PmiREN	/	Chr12	24358362	24358384	+	N/Y
osa-miR5521	miRbase		Chr1	2334230	2334250	-	N/Y
osa-miR5522	miRbase		Chr4	21650334	21650354	+	N/N
osa-miR5523	miRbase		Chr4	18205684	18205705	-	Y/N
osa-miR2275d	miRbase		Chr8	3736826	3736847	-	Y/Y
osa-miR5524	miRbase		Chr9	3278307	3278327	+	N/N
osa-miR5525	miRbase		Chr9	3904488	3904509	-	Y/N
osa-miR5526	miRbase		Chr10	1584957	1584977	+	N/N
Osa-miR5527	miRbase/PmiREN	/	Chr11	9589970	9589990	+	N/Y
osa-miR5528	miRbase		Chr11	9586997	9587017	-	N/N
osa-miR5529	miRbase		Chr11	24804937	24804957	-	N/Y
osa-miR5530	miRbase		Chr12	21782338	21782358	+	N/Y
osa-miR5531	miRbase		Chr3	10288543	10288564	+	N/N
osa-miR5532	miRbase		Chr4	23647976	23647997	+	N/N
osa-miR5533	miRbase		Chr4	2761849	2761869	-	N/N
osa-miR5534a	miRbase		Chr11	6404363	6404383	-	N/N
osa-miR5534b	miRbase		Chr11	6404490	6404510	-	N/N
osa-miR5535	miRbase		Chr12	12446271	12446292	-	N/N
osa-miR5536	miRbase		Chr9	9140172	9140193	-	Y/N
osa-miR5537	miRbase		Chr10	11112761	11112782	+	N/N
osa-miR5538	miRbase		Chr10	21337293	21337314	+	Y/N
osa-miR5539a	miRbase		Chr12	20548938	20548959	-	N/N
osa-miR5540	miRbase		Chr1	35552738	35552758	-	N/N
Osa-miR5541	miRbase/PmiREN	/	Chr2	10239116	10239136	-	N/N
Osa-miR5542	miRbase/PmiREN	/	Chr4	32797727	32797747	-	N/N
osa-miR5543	miRbase		Chr4	16417319	16417339	-	N/N
osa-miR5544	miRbase		Chr2	19335011	19335032	+	N/N