Chr:
Chr1
Start:
8417119
End:
8417142
Strand:
-
Sequence:
UGUGGUAUGUUGGCAAUGUAGGAA
Length:
24
precursor sequence:
CCUCAUACUUCCUCAUUGACCAAUAUACCACAAAACACUACAAUGUUGGCCUCUUUACCACUAUCAAGACACUUCUCCCAGUCCAUUUUGUCUGUUGAGCAUCAGGACAUUAAUAAGUGUGGAGUGCCUUGCUCUACAUCAUCCUCUGUAAACAGUCUGGGGUUGCAGUUUUAUGUGGUAUGUUGGCAAUGUAGGAAGUCUGAAUCGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
8
NEP:
2.92%
LE_num:
LEP:
3.65%
ME_num:
MEP:
89.05%
HE_num:
HEP:
4.38%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.89
Avg Expression:
23.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -3.34510088620912 | 0.000229574896611376 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.85013594647795 | 0.01718150814131 |