RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR2863c_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

29869574

End:

29869597

Strand:

+

Sequence:

UUAGUAGGACUAGAAUGGGCCAAA

Length:

24

precursor sequence:

GGGUAUUUCUUGACCCACUUUAGUUCAACUAAAAUGAACUAAGUUUCACUUUUAGAGAGUCUAAAGUGAAAUUUAGUUCAUUUAGUAGGACUAGAAUGGGCCAAAGAAUACCCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

19

NEP:

6.93%

LE_num:

26

LEP:

9.49%

ME_num:

206

MEP:

75.18%

HE_num:

23

HEP:

8.39%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seed

Tau :

0.96

Avg Expression:

46.31

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA-3.584680157222350.035384427955249