Chr:
Chr11
Start:
11920762
End:
11920785
Strand:
+
Sequence:
AACUAGAGUGGGUCAACGGGUACC
Length:
24
precursor sequence:
GGUGUGGGUCACUCUGUUUGUACCUGUUGACUGACUCUGGUUCAACAAAACCAAUUUUACUUUUGUUGAACUAGAGUGGGUCAACGGGUACCCACAGAGUAAUUUGUACCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
72
NEP:
26.28%
LE_num:
LEP:
8.03%
ME_num:
MEP:
59.49%
HE_num:
HEP:
6.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.83
Avg Expression:
14.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -1.28449802844845 | 8.65392373470119e-06 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.14264365914541 | 0.0012332676487033 |
| 3 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.12553940590369 | 0.0134328030201063 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.70053971714475 | 0.015107542679984 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -3.14592158958148 | 5.43115827325927e-05 |