| SRR3203907 | leaf | WT | 0.46 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 10.16 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 2.19 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 0.79 | MC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 8.28 | MC |
| SRR3140955 | leaf | "45C, 12h" | 0.40 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 5.73 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 0.59 | MC |
| SRR8258050 | leaf_sheath | R_bph | 8.66 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 6.17 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 5.23 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 14.21 | MC |
| SRR7058097 | leaf | rice_mock | 1.08 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 6.85 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 2.51 | MC |
| SRR7058098 | leaf | rice_RSV | 0.82 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 0.55 | MC |
| SRR2154076 | seedling | Guangluai4_seedling | 1.05 | MC |
| SRR2154077 | seedling | KDM105_seedling | 0.72 | MC |
| SRR2154074 | seed | Nipponbare_seed | 1.20 | MC |
| SRR2154072 | seed | Rathuwee_seed | 0.36 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 0.45 | MC |
| SRR2154070 | seed | Guangluai4_seed | 0.43 | MC |
| SRR2154071 | seed | KDM105_seed | 0.19 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 0.95 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 4.10 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 0.79 | MC |
| SRR1061620 | flag_leaf | Normal | 1.40 | MC |
| SRR10704058 | leaf | Glyphosate | 2.80 | MC |
| SRR447128 | root | As(III) 20 uM | 0.35 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 0.30 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 8.24 | MC |
| SRR089619 | panicle | control | 2.46 | MC |
| SRR447135 | shoot | As(III) 20 uM | 0.54 | MC |
| SRR447134 | shoot | As(III) 80 uM | 2.39 | MC |
| SRR447130 | root | As(III) 20 uM | 1.04 | MC |
| SRR1849765 | leaf | Control 30min | 3.60 | MC |
| SRR1849767 | leaf | Control 30min | 8.61 | MC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 1.27 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 5.43 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 0.63 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 10.77 | MC |
| SRR6498701 | leaf | "WT, Control" | 8.52 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 12.59 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 13.27 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 2.03 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 4.59 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 7.94 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 2.02 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 2.78 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 5.06 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 3.01 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 1.90 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 4.85 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 5.33 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 7.04 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 0.76 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 6.29 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 3.19 | MC |
| SRR1849773 | leaf | Control 120min | 4.39 | MC |
| SRR1849772 | leaf | Control 120min | 3.05 | MC |
| SRR1849771 | leaf | Control 120min | 4.44 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 8.97 | MC |
| SRR7058096 | leaf | rice_mock | 0.76 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 1.53 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 5.10 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 0.64 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 4.06 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 5.92 | MC |
| SRR10704060 | leaf | Glyphosate | 1.39 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 0.38 | MC |
| SRR2154075 | seed | Taipei309_seed | 2.19 | MC |
| SRR3140952 | leaf | "45C, 0h" | 0.58 | MC |
| SRR976171 | lamina_joint | wild type | 0.53 | MC |
| SRR4098208 | root | No treatment | 4.48 | MC |
| SRR4098209 | leaf | No treatment | 0.74 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2.16 | MC |
| SRR9070100 | shoot_base | WT_base | 0.17 | MC |
| SRR4098205 | seedling | Heat (50C) | 3.04 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 4.36 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 6.69 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 9.29 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 4.09 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 3.53 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 1.83 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 1.03 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 0.31 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 0.21 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 0.33 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 0.18 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 4.88 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 1.66 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 4.82 | MC |
| SRR2862363 | leaf | mock leaf cells | 1.73 | MC |
| SRR8649147 | panicle | panicle tissue | 1.81 | MC |
| SRR4098207 | panicle | No treatment | 0.57 | MC |
| SRR10704055 | leaf | CK | 2.01 | MC |
| SRR10704057 | leaf | CK | 2.04 | MC |
| SRR10704056 | leaf | CK | 2.69 | MC |
| SRR10704059 | leaf | Glyphosate | 7.58 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 0.35 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 4.43 | MC |
| SRR6498699 | leaf | "WT, Control" | 10.67 | MC |
| SRR2154078 | seedling | Rathuwee_seedling | 0.56 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 5.45 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 7.29 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 6.90 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 2.11 | MC |
| SRR5049785 | anther | floret length/mm: >7.0 | 5.34 | MC |
| SRR4098203 | seedling | No treatment | 5.10 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.65 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 0.61 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 0.69 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 0.78 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 3.99 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 5.37 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 15.61 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 9.68 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 0.37 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 0.97 | MC |
| SRR1849784 | root | Control 120min | 4.71 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 4.75 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 2.81 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 2.10 | MC |
| SRR3110556 | shoot | shoot control | 3.55 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 5.53 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2.14 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 8.05 | MC |
| SRR1061617 | panicle | Heat Stress | 0.44 | MC |
| SRR1061614 | panicle | Normal | 0.90 | MC |
| SRR1061615 | panicle | Heat Stress | 0.45 | MC |
| SRR1061612 | panicle | Normal | 0.44 | MC |
| SRR1061613 | panicle | Heat Stress | 0.69 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 0.92 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 5.22 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 6.91 | MC |
| SRR9937394 | spikelet | sRNA apical spikelets | 0.61 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 4.75 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 0.60 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 5.36 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 3.97 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 1.83 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 4.59 | MC |
| SRR3140954 | leaf | "45C, 12h" | 0.40 | MC |
| SRR089621 | panicle | cold | 1.00 | MC |
| SRR089620 | panicle | drought | 0.78 | MC |
| SRR3140957 | leaf | "45C, 24h" | 0.90 | MC |
| SRR089622 | panicle | salt | 2.86 | MC |
| SRR4098172 | seedling | Cold (4C) | 2.75 | MC |
| SRR3140956 | leaf | "45C, 24h" | 4.07 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 7.47 | MC |
| SRR3140953 | leaf | "45C, 0h" | 0.60 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 3.11 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 13.80 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 5.52 | MC |
| SRR8258048 | leaf_sheath | R_bph | 6.90 | MC |
| SRR1740023 | seedling | IR64-Control | 0.82 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 0.46 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 13.30 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 3.02 | MC |
| SRR1654490 | leaf | wild type | 0.93 | MC |
| SRR3110557 | shoot | shoot treated | 1.64 | MC |
| SRR8258051 | leaf_sheath | R_bph | 6.91 | MC |