Chr:
Chr1
Start:
25326399
End:
25326419
Strand:
-
Sequence:
UCUCCUCAGCAGCACAAGAAG
Length:
21
precursor sequence:
UCCAUAUUAUUCUUCUUGUGCUGCUGAAGAGACUCACCGACCUCCGGCGGCGACGUCUUCUUCUUCCCAUUGAAGGUCUCGGUCUUCUCCUUCAGCUCCUGCGGCAUGGGACGACGAGGUGGAGCUCGAGUCCUCGAGGAACUUGUGCCGCAUGGGACGCCCACCAAGAAAGCCCCCCUCGUCGCCCCGCCACCGCCACCGCCGCCGCCGAACAACCAAGAGUCUGAAUCUGAUUCUGAUUCCGAUGACGGCCAAAAGUCCGAUUCCAGUGACGACGAGGCGCUGCCGGUGCCGAACCCAGCGCUUCAGGCCAACAAGAAUGUGCCUCCGUCCGAUGAUGAUGAGGAUGACGACCAAGAGUCCGAUUCCGGUGAUGCCCGAGGUCGGUGAGUCUCCUCAGCAGCACAAGAAGAAGAAUAUGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
19
NEP:
6.93%
LE_num:
LEP:
14.96%
ME_num:
MEP:
74.09%
HE_num:
HEP:
4.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.92
Avg Expression:
30.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.44628276612067 | 0.0069620139148351 |