RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR5795	miRbase		Chr9	11103946	11103967	-	Y/N
osa-miR5796	miRbase		Chr8	2672531	2672551	-	N/Y
osa-miR5797	miRbase		Chr8	17084777	17084797	+	N/Y
osa-miR5798	miRbase		Chr7	6672130	6672150	-	N/Y
osa-miR812s	miRbase		Chr3	6033241	6033264	-	Y/N
osa-miR5799	miRbase		Chr6	10732173	10732196	+	N/N
Osa-miR5800	miRbase/PmiREN	/	Chr11	24921150	24921170	-	N/Y
Osa-miR5801a	miRbase/PmiREN	/	Chr12	19318259	19318284	-	N/N
Osa-miR5802	miRbase/PmiREN	/	Chr1	13088732	13088757	+	Y/N
osa-miR812t	miRbase		Chr6	17370237	17370260	-	Y/N
osa-miR812u	miRbase		Chr11	8663591	8663614	-	Y/Y
osa-miR5803	miRbase		Chr4	30231544	30231567	+	Y/N
Osa-miR5804	miRbase/PmiREN	/	Chr4	20810170	20810190	-	Y/N
osa-miR5805	miRbase		Chr12	13821863	13821886	-	Y/N
osa-miR5806	miRbase		Chr6	24708676	24708696	+	Y/Y
Osa-miR812v	miRbase/PmiREN	/	Chr5	18432845	18432870	-	N/N
osa-miR5807	miRbase		Chr8	3597816	3597839	-	N/N
osa-miR5801b	miRbase		Chr9	18739256	18739279	+	Y/N
osa-miR5809	miRbase		Chr4	23527612	23527631	-	N/N
osa-miR5810	miRbase		Chr12	7333302	7333325	-	N/N
osa-miR5811	miRbase		Chr3	13198037	13198060	-	N/N
Osa-miR5812	miRbase/PmiREN	/	Chr1	11846176	11846201	-	Y/N
Osa-miR5813	miRbase/PmiREN	/	Chr4	9953000	9953021	-	N/N
Osa-miR5814	miRbase/PmiREN	/	Chr6	26661423	26661446	-	Y/N
osa-miR5815	miRbase		Chr1	25017383	25017406	-	Y/N
osa-miR5816	miRbase		Chr9	11584062	11584085	-	Y/N
osa-miR5143b	miRbase		Chr1	8415818	8415841	-	Y/N
osa-miR5817	miRbase		Chr1	5990135	5990158	+	N/N
osa-miR5818	miRbase		Chr4	13157349	13157369	+	N/Y
osa-miR5819	miRbase		Chr1	29695852	29695872	+	N/N
osa-miR5820	miRbase		Chr10	13982658	13982678	+	N/Y
osa-miR5821	miRbase		Chr12	24605434	24605454	+	N/N
osa-miR5822	miRbase		Chr11	26335946	26335966	+	N/N
Osa-miR5823	miRbase/PmiREN	/	Chr11	21506687	21506712	-	N/N
osa-miR5824	miRbase		Chr1	1761540	1761563	-	Y/N
osa-miR1319b	miRbase		Chr3	23399924	23399947	+	N/N
Osa-miR5825	miRbase/PmiREN	/	Chr5	23591566	23591591	-	Y/N
osa-miR5826	miRbase		Chr11	12859207	12859230	+	N/N
Osa-miR5827	miRbase/PmiREN	/	Chr4	30082047	30082067	-	N/N
Osa-miR5828	miRbase/PmiREN	/	Chr6	16015701	16015721	+	N/N
osa-miR5829	miRbase		Chr6	20149377	20149400	+	N/N
osa-miR5830	miRbase		Chr1	4352598	4352621	-	Y/N
osa-miR5831	miRbase		Chr5	28577946	28577969	+	Y/N
Osa-miR5179	miRbase/PmiREN	/	Chr2	12450920	12450940	+	Y/N
osa-miR5832	miRbase		Chr12	21169058	21169078	+	N/N
Osa-miR5833	miRbase/PmiREN	/	Chr5	9382713	9382735	+	N/N
Osa-miR5834	miRbase/PmiREN	/	Chr6	4758671	4758691	-	N/N
Osa-miR5835	miRbase/PmiREN	/	Chr6	19306937	19306962	-	N/N
osa-miR2873c	miRbase		Chr7	27503533	27503553	+	N/N
osa-miR5836	miRbase		Chr6	17701925	17701945	-	N/Y
osa-miR5837.2	miRbase		Chr11	24702182	24702202	-	N/N
osa-miR5837.1	miRbase		Chr11	24702161	24702181	-	N/Y
Osa-miR5516b	miRbase/PmiREN	/	Chr5	13962669	13962689	-	N/Y
osa-miR6245	miRbase		Chr2	16647884	16647904	+	N/N
osa-miR1440b	miRbase		Chr9	5980663	5980683	+	N/N
osa-miR6246	miRbase		Chr3	1625448	1625470	+	Y/N
Osa-miR6247	miRbase/PmiREN	/	Chr7	19977427	19977449	-	N/N
osa-miR6248	miRbase		Chr3	32572995	32573015	-	Y/N
osa-miR5337b	miRbase		Chr3	35885491	35885511	-	N/N
osa-miR6249a	miRbase		Chr3	744670	744690	-	Y/N
osa-miR5512b	miRbase		Chr4	18386989	18387009	-	Y/N
osa-miR6250	miRbase		Chr6	28264709	28264730	+	N/N
Osa-miR6251	miRbase/PmiREN	/	Chr9	15792347	15792367	+	N/N
osa-miR6252	miRbase		Chr12	18110554	18110576	-	N/N
osa-miR6253	miRbase		Chr7	25019061	25019082	-	N/N
osa-miR6254	miRbase		Chr12	1970872	1970892	+	N/N
osa-miR6255	miRbase		Chr7	25018839	25018860	-	N/N
Osa-miR6256	miRbase/PmiREN	/	Chr3	1235636	1235659	-	N/N
osa-miR818f	miRbase		Chr8	18746593	18746613	-	N/N
osa-miR1437b-5p	miRbase		Chr8	3956058	3956078	-	N/N
osa-miR1437b-3p	miRbase		Chr8	3955932	3955955	-	Y/N
osa-miR7692-5p	miRbase		Chr1	26250210	26250233	+	N/N
osa-miR7692-3p	miRbase		Chr1	26250474	26250497	+	Y/N
osa-miR7693-5p	miRbase		Chr12	25875300	25875323	-	N/N
osa-miR7693-3p	miRbase		Chr12	25875198	25875219	-	Y/N
osa-miR7694-5p	miRbase		Chr10	18864452	18864475	-	N/N
osa-miR7694-3p	miRbase		Chr10	18864382	18864403	-	Y/N
osa-miR7695-5p	miRbase		Chr1	11667043	11667066	-	Y/N
osa-miR7695-3p	miRbase		Chr1	11666852	11666872	-	Y/Y
osa-miR1861o	miRbase		ChrUn	521065	521086	+	Y/N
osa-miR5079b	miRbase		Chr10	10916069	10916090	-	N/N
osa-miR5539b	miRbase		Chr12	20553832	20553853	-	N/N
osa-miR6249b	miRbase		Chr4	30286469	30286489	+	Y/N
osa-miR531c	miRbase		Chr11	26930692	26930715	+	Y/N
osa-miR11336-5p	miRbase		Chr1	35090297	35090320	+	Y/N
osa-miR11336-3p	miRbase		Chr1	35090379	35090403	+	N/N
osa-miR11337-5p	miRbase		Chr2	27593846	27593866	+	N/N
osa-miR11337-3p	miRbase		Chr2	27593919	27593939	+	Y/N
osa-miR11338-5p	miRbase		Chr2	34890514	34890537	+	N/N
osa-miR11338-3p	miRbase		Chr2	34890601	34890624	+	Y/N
osa-miR11339-5p	miRbase		Chr1	10371798	10371818	+	N/N
osa-miR11339-3p	miRbase		Chr1	10371868	10371888	+	N/N
osa-miR11340-5p	miRbase		Chr6	7715047	7715070	+	N/N
osa-miR11340-3p	miRbase		Chr6	7715459	7715482	+	Y/N
osa-miR11341-5p	miRbase		Chr9	22895132	22895155	+	N/N
osa-miR11341-3p	miRbase		Chr9	22895229	22895252	+	Y/N
osa-miR11342-5p	miRbase		Chr11	23289397	23289417	-	Y/N
osa-miR11342-3p	miRbase		Chr11	23289311	23289332	-	N/N
osa-miR11343-5p	miRbase		Chr12	16169144	16169164	-	Y/N
osa-miR11343-3p	miRbase		Chr12	16169071	16169091	-	N/N
osa-miR11344-5p	miRbase		Chr10	21166686	21166707	+	Y/N
osa-miR11344-3p	miRbase		Chr10	21166714	21166734	+	N/N
osa-miR2120b-5p	miRbase		Chr1	1830261	1830280	+	N/N
osa-miR2120b-3p	miRbase		Chr1	1830288	1830307	+	N/N
osa-miR5801c-5p	miRbase		Chr8	20930473	20930493	+	N/N
osa-miR5801c-3p	miRbase		Chr8	20930517	20930537	+	N/N
osa-miR6245b-5p	miRbase		Chr12	12892596	12892616	-	Y/N
osa-miR6245b-3p	miRbase		Chr12	12892477	12892497	-	N/N
Osa-miR397b	PmiREN		Chr2	3280864	3280885	-	Y/Y
Osa-miR397a	PmiREN		Chr6	28489798	28489818	+	Y/Y
Osa-miRN2228b	PmiREN		Chr8	4435491	4435511	-	N/Y
Osa-miRN2232d	PmiREN		Chr9	6711930	6711950	-	Y/N
Osa-miRN2232e	PmiREN		Chr1	26307378	26307398	+	Y/N
Osa-miRN2232b	PmiREN		Chr6	8837476	8837496	+	Y/N
Osa-miRN2232c	PmiREN		Chr7	24306549	24306569	-	Y/N
Osa-miR11340	PmiREN		Chr6	7715339	7715361	+	N/N
Osa-miR2871	PmiREN		Chr4	8340904	8340924	+	Y/N
Osa-miRN2232j	PmiREN		Chr12	25611723	25611743	+	Y/N
Osa-miR2876	PmiREN		Chr6	17008984	17009005	-	Y/N
Osa-miRN2203b	PmiREN		Chr1	7857738	7857758	+	Y/N
Osa-miRN2203a	PmiREN		Chr1	25180654	25180674	+	Y/N
Osa-miR3979	PmiREN		Chr11	19480162	19480182	+	Y/Y
Osa-miRN2309c	PmiREN		Chr3	33124849	33124869	-	N/Y
Osa-miRN2309b	PmiREN		Chr10	20405654	20405674	-	N/Y
Osa-miRN2309a	PmiREN		Chr7	29070631	29070652	+	Y/N
Osa-miRN2332	PmiREN		Chr9	8961276	8961296	-	N/N