RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR1428e-5p	miRbase		Chr3	23076880	23076901	+	Y/N
Osa-miR1428e	miRbase/PmiREN	/	Chr3	23076951	23076971	+	Y/N
osa-miR1858a	miRbase		Chr9	13536656	13536676	+	Y/N
osa-miR1858b	miRbase		Chr9	13194082	13194102	+	Y/N
osa-miR1846a-5p	miRbase		Chr10	529306	529326	+	Y/N
osa-miR1846a-3p	miRbase		Chr10	529335	529355	+	Y/Y
osa-miR1846b-5p	miRbase		Chr11	27715881	27715901	-	Y/N
Osa-miR1846b	miRbase/PmiREN	/	Chr11	27715852	27715872	-	Y/Y
Osa-miR1859	miRbase/PmiREN	/	Chr1	673288	673309	-	Y/Y
osa-miR1860-5p	miRbase		Chr1	934510	934530	-	N/N
osa-miR1860-3p	miRbase		Chr1	934456	934477	-	N/N
osa-miR1861a	miRbase		Chr1	15049794	15049815	+	Y/N
Osa-miR1861b	miRbase/PmiREN	/	Chr2	20715979	20716000	+	Y/Y
osa-miR1861c	miRbase		Chr2	20716196	20716217	+	Y/N
osa-miR1861d	miRbase		Chr4	6536354	6536375	+	Y/N
osa-miR1861e	miRbase		Chr4	6536571	6536592	+	Y/N
Osa-miR1861f	miRbase/PmiREN	/	Chr5	18668414	18668435	+	Y/Y
osa-miR1861g	miRbase		Chr5	18668633	18668654	+	Y/N
Osa-miR1861h	miRbase/PmiREN	/	Chr6	27238262	27238283	-	Y/Y
Osa-miR1861i	miRbase/PmiREN	/	Chr6	14949513	14949534	+	Y/Y
Osa-miR1861j	miRbase/PmiREN	/	Chr8	15132802	15132823	-	Y/Y
osa-miR1861k	miRbase		Chr8	15132584	15132605	-	Y/N
Osa-miR1861l	miRbase/PmiREN	/	Chr9	13532448	13532469	+	Y/Y
osa-miR1861m	miRbase		Chr9	13532666	13532687	+	Y/N
osa-miR1861n	miRbase		Chr12	16586629	16586650	-	Y/Y
osa-miR1862a	miRbase		Chr1	26192362	26192385	+	Y/N
Osa-miR1862b	miRbase/PmiREN	/	Chr8	8341244	8341267	-	Y/N
Osa-miR1862c	miRbase/PmiREN	/	Chr10	16093939	16093962	+	Y/N
osa-miR1863a	miRbase		Chr2	8522086	8522109	+	N/N
Osa-miR1864	miRbase/PmiREN	/	Chr2	14949079	14949104	-	Y/N
osa-miR1865-5p	miRbase		Chr3	34000604	34000627	+	N/N
osa-miR1865-3p	miRbase		Chr3	34000704	34000727	+	Y/N
Osa-miR1866	miRbase/PmiREN	/	Chr3	6510880	6510903	+	Y/Y
osa-miR1866-3p	miRbase		Chr3	6510921	6510942	+	Y/Y
osa-miR1868	miRbase		Chr4	19715494	19715517	+	Y/Y
Osa-miR812f	miRbase/PmiREN	/	Chr4	13243647	13243672	+	Y/N
osa-miR1869	miRbase		Chr4	21644862	21644885	+	N/N
Osa-miR1870	miRbase/PmiREN	/	Chr6	21164798	21164821	+	N/Y
osa-miR1870-3p	miRbase		Chr6	21164894	21164917	+	Y/Y
Osa-miR1871	miRbase/PmiREN	/	Chr6	13330544	13330569	+	Y/N
osa-miR1872	miRbase		Chr6	4923876	4923899	-	Y/N
osa-miR1873	miRbase		Chr7	12755926	12755949	+	Y/N
osa-miR1874-5p	miRbase		Chr8	8702892	8702915	-	Y/Y
Osa-miR1874	miRbase/PmiREN	/	Chr8	8702823	8702846	-	Y/Y
Osa-miR1875	miRbase/PmiREN	/	Chr9	17567956	17567981	-	Y/N
Osa-miR1862d	miRbase/PmiREN	/	Chr10	4833700	4833723	+	Y/N
Osa-miR1876	miRbase/PmiREN	/	Chr10	4833470	4833493	+	Y/N
Osa-miR1862e	miRbase/PmiREN	/	Chr11	2523291	2523314	+	Y/N
Osa-miR1877	miRbase/PmiREN	/	Chr9	21044089	21044112	+	Y/Y
osa-miR1878	miRbase		Chr9	16555519	16555542	+	Y/N
osa-miR1879	miRbase		Chr10	5635431	5635454	+	Y/N
osa-miR1880	miRbase		Chr11	13959900	13959923	+	Y/N
osa-miR1881	miRbase		Chr12	5725959	5725982	+	Y/N
Osa-miR1882a	miRbase/PmiREN	/	Chr3	18923970	18923993	-	N/N
Osa-miR1882b	miRbase/PmiREN	/	Chr8	9847268	9847293	+	N/N
Osa-miR1882c	miRbase/PmiREN	/	Chr7	9122417	9122440	+	N/N
Osa-miR1882d	miRbase/PmiREN	/	Chr8	18739434	18739457	-	N/N
osa-miR1882e-5p	miRbase		Chr10	10321011	10321034	-	N/N
Osa-miR1882e	miRbase/PmiREN	/	Chr10	10320914	10320937	-	N/Y
Osa-miR1882f	miRbase/PmiREN	/	Chr11	11073503	11073526	+	N/N
Osa-miR1882g	miRbase/PmiREN	/	Chr11	20828629	20828652	+	N/N
Osa-miR1882h	miRbase/PmiREN	/	Chr12	21511554	21511577	+	N/N
Osa-miR812g	miRbase/PmiREN	/	Chr3	5230185	5230208	+	N/N
osa-miR812h	miRbase		Chr3	1164964	1164987	-	Y/N
Osa-miR812i	miRbase/PmiREN	/	Chr7	22152501	22152524	+	Y/N
Osa-miR812j	miRbase/PmiREN	/	Chr8	19806531	19806556	+	Y/N
osa-miR1883a	miRbase		Chr11	13523541	13523564	+	Y/N
osa-miR1883b	miRbase		Chr11	9368076	9368099	-	Y/N
osa-miR1319a	miRbase		Chr11	702144	702167	-	Y/N
Osa-miR1320	miRbase/PmiREN	/	Chr6	5073570	5073590	-	Y/Y
osa-miR1320-3p	miRbase		Chr6	5073521	5073541	-	Y/Y
Osa-miR1846c	miRbase/PmiREN	/	Chr12	270799	270819	+	Y/N
osa-miR1846c-3p	miRbase		Chr12	270828	270848	+	N/N
osa-miR2055	miRbase		Chr9	431438	431458	-	N/N
Osa-miR827	miRbase/PmiREN	/	Chr2	23901168	23901188	-	Y/N
osa-miR1846e	miRbase		Chr9	13211477	13211496	-	Y/N