RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR827	miRbase/PmiREN	/	Chr2	23901168	23901188	-	Y/N
osa-miR1846e	miRbase		Chr9	13211477	13211496	-	Y/N
Osa-miR1428f	miRbase/PmiREN	/	Chr7	5451407	5451428	-	Y/N
Osa-miR1428g	miRbase/PmiREN	/	Chr10	3961379	3961400	+	Y/N
osa-miR2090	miRbase		Chr1	38764364	38764385	-	Y/N
osa-miR2091-5p	miRbase		Chr12	19403429	19403449	-	N/N
osa-miR2091-3p	miRbase		Chr12	19403378	19403399	-	N/N
osa-miR2092-5p	miRbase		Chr12	10116332	10116352	+	Y/N
osa-miR2092-3p	miRbase		Chr12	10116401	10116422	+	Y/N
osa-miR2093-5p	miRbase		Chr5	16056053	16056072	-	N/N
osa-miR2093-3p	miRbase		Chr5	16056034	16056053	-	N/N
osa-miR2094-5p	miRbase		Chr2	29779650	29779670	+	N/N
osa-miR2094-3p	miRbase		Chr2	29779679	29779700	+	Y/N
osa-miR2095-5p	miRbase		Chr10	5931466	5931487	+	Y/N
osa-miR2095-3p	miRbase		Chr10	5931517	5931536	+	N/N
osa-miR2096-5p	miRbase		Chr1	6443398	6443418	+	N/N
osa-miR2096-3p	miRbase		Chr1	6443596	6443616	+	N/N
osa-miR2097-5p	miRbase		Chr1	9055610	9055631	+	N/N
osa-miR2097-3p	miRbase		Chr1	9055748	9055769	+	N/N
osa-miR2098-5p	miRbase		Chr10	18080280	18080299	-	N/N
osa-miR2098-3p	miRbase		Chr10	18080252	18080271	-	Y/N
osa-miR2099-5p	miRbase		Chr1	42570862	42570883	+	N/N
osa-miR2099-3p	miRbase		Chr1	42570884	42570903	+	N/N
osa-miR2100-5p	miRbase		Chr11	16195125	16195146	-	N/N
osa-miR2100-3p	miRbase		Chr11	16195009	16195030	-	N/N
osa-miR2101-5p	miRbase		Chr12	17986700	17986721	+	N/N
osa-miR2101-3p	miRbase		Chr12	17986766	17986787	+	N/Y
osa-miR2102-5p	miRbase		Chr5	18250492	18250511	+	N/N
osa-miR2102-3p	miRbase		Chr5	18250557	18250578	+	N/N
osa-miR396f-5p	miRbase		Chr2	35636693	35636714	-	Y/N
osa-miR396f-3p	miRbase		Chr2	35636554	35636577	-	Y/Y
osa-miR2103	miRbase		Chr12	16852607	16852628	-	N/N
osa-miR2104	miRbase		Chr11	13372018	13372039	-	N/N
osa-miR2105	miRbase		Chr12	4602492	4602511	+	N/N
osa-miR2106	miRbase		Chr2	23768619	23768639	-	Y/N
osa-miR2120	miRbase		Chr8	22733821	22733844	+	N/N
osa-miR2121a	miRbase		Chr1	16373523	16373546	+	N/N
osa-miR2121b	miRbase		Chr4	16882396	16882419	+	N/N
osa-miR2122	miRbase		Chr2	8715222	8715243	+	N/N
Osa-miR2118a	miRbase/PmiREN	/	Chr4	21642950	21642971	-	N/Y
Osa-miR2118b	miRbase/PmiREN	/	Chr4	21645323	21645344	-	Y/Y
Osa-miR2118c	miRbase/PmiREN	/	Chr4	21647968	21647991	-	Y/Y
Osa-miR2118d	miRbase/PmiREN	/	Chr4	21647727	21647748	-	Y/Y
Osa-miR2118e	miRbase/PmiREN	/	Chr4	21647463	21647486	-	Y/N
Osa-miR2118f	miRbase/PmiREN	/	Chr4	21650553	21650574	-	Y/Y
Osa-miR2118g	miRbase/PmiREN	/	Chr4	21650339	21650360	-	Y/Y
Osa-miR2118h	miRbase/PmiREN	/	Chr4	21652679	21652700	-	Y/Y
osa-miR2118i	miRbase		Chr4	21652426	21652447	-	N/Y
Osa-miR2118j	miRbase/PmiREN	/	Chr4	21654635	21654656	-	Y/Y
Osa-miR2118k	miRbase/PmiREN	/	Chr4	21656982	21657003	-	Y/Y
osa-miR2118l	miRbase		Chr4	21656743	21656764	-	N/Y
Osa-miR2118m	miRbase/PmiREN	/	Chr4	21658892	21658913	-	Y/Y
Osa-miR2118n	miRbase/PmiREN	/	Chr4	21661532	21661555	-	Y/Y
Osa-miR2118o	miRbase/PmiREN	/	Chr4	21661299	21661320	-	N/N
Osa-miR2118p	miRbase/PmiREN	/	Chr11	7807471	7807492	-	Y/N
osa-miR2118q	miRbase		Chr11	7810747	7810768	-	Y/Y
osa-miR2118r	miRbase		Chr11	7810261	7810282	-	Y/N
osa-miR2275a	miRbase		Chr8	1205071	1205092	+	N/N
osa-miR2275b	miRbase		Chr8	1202555	1202576	+	N/N
osa-miR2863a	miRbase		Chr3	27108349	27108369	+	Y/N
osa-miR2864.1	miRbase		Chr12	25664791	25664811	-	N/Y
osa-miR2864.2	miRbase		Chr12	25664780	25664800	-	Y/N
Osa-miR2865	miRbase/PmiREN	/	Chr9	8515762	8515785	-	Y/N
osa-miR2866	miRbase		Chr3	7331671	7331690	-	N/N
osa-miR2867-5p	miRbase		Chr11	16277662	16277683	+	N/N
Osa-miR2867	miRbase/PmiREN	/	Chr11	16277721	16277740	+	N/Y
osa-miR2868	miRbase		Chr11	17938280	17938299	+	N/N
osa-miR2869	miRbase		Chr5	26915339	26915359	-	N/N
osa-miR2870	miRbase		Chr1	27181881	27181901	-	N/N
Osa-miR2863b	miRbase/PmiREN	/	Chr2	4195675	4195695	-	Y/N
osa-miR2905	miRbase		Chr3	13591904	13591924	-	Y/N
osa-miR2871a-5p	miRbase		Chr5	3877019	3877042	+	Y/N
osa-miR2871a-3p	miRbase		Chr5	3877104	3877124	+	Y/N
osa-miR2871b-5p	miRbase		Chr4	8340811	8340834	+	Y/Y
osa-miR2871b-3p	miRbase		Chr4	8340904	8340924	+	Y/N
osa-miR2872	miRbase		Chr11	2525324	2525344	+	N/N
Osa-miR2873a	miRbase/PmiREN	/	Chr11	28933585	28933608	-	Y/N
osa-miR2874	miRbase		Chr8	15598096	15598119	+	Y/N
osa-miR2875	miRbase		Chr8	27092100	27092123	+	N/N
osa-miR2876-5p	miRbase		Chr6	17009125	17009145	-	N/N
osa-miR2876-3p	miRbase		Chr6	17008985	17009005	-	Y/N
Osa-miR2877	miRbase/PmiREN	/	Chr4	28585254	28585279	-	Y/N
Osa-miR2878	miRbase/PmiREN	/	Chr8	26181392	26181417	+	Y/N
osa-miR2878-3p	miRbase		Chr8	26181435	26181458	+	Y/N
osa-miR1863c	miRbase		Chr12	4869465	4869488	+	Y/Y
osa-miR2879	miRbase		Chr2	18895917	18895940	-	Y/N
Osa-miR2880	miRbase/PmiREN	/	Chr3	22741628	22741651	+	Y/Y
Osa-miR396g	miRbase/PmiREN	/	Chr6	5300640	5300660	-	Y/Y
osa-miR396h	miRbase		Chr2	32841771	32841791	+	Y/Y
Osa-miR396d	miRbase/PmiREN	/	Chr2	27728695	27728715	-	Y/Y
osa-miR1863b	miRbase		Chr12	4867560	4867583	+	N/N
osa-miR1863b.2	miRbase		Chr12	4867585	4867607	+	Y/N
osa-miR2907a	miRbase		Chr3	23598586	23598607	+	N/N
osa-miR2907b	miRbase		Chr11	7278060	7278081	+	N/N
osa-miR2907c	miRbase		Chr11	11906618	11906639	+	N/N
osa-miR2907d	miRbase		Chr12	12115126	12115147	+	N/N
osa-miR2918	miRbase		Chr6	31091929	31091949	-	N/N
osa-miR2919	miRbase		Chr5	9936948	9936966	-	N/N
osa-miR2920	miRbase		Chr7	28405591	28405613	-	N/N
osa-miR2921	miRbase		Chr11	22213557	22213580	+	N/N
osa-miR2922	miRbase		Chr10	22684298	22684317	-	N/N
osa-miR2923	miRbase		Chr11	21507100	21507121	+	N/N
osa-miR2924	miRbase		Chr1	11894404	11894424	+	N/N
osa-miR2925	miRbase		Chr1	25801074	25801092	+	N/N
osa-miR2926	miRbase		Chr6	11402646	11402665	+	N/N
osa-miR2927	miRbase		Chr1	37098129	37098151	+	N/N
osa-miR2928	miRbase		Chr2	6536024	6536043	+	N/N
osa-miR2929	miRbase		Chr10	1774340	1774360	-	N/N
osa-miR2930	miRbase		Chr6	8376863	8376884	+	N/N
osa-miR2931	miRbase		Chr6	1893817	1893836	+	N/N
osa-miR2932	miRbase		Chr10	10556709	10556727	+	N/N
osa-miR395x	miRbase		Chr4	32623127	32623147	+	N/N
osa-miR395y	miRbase		Chr8	3299895	3299915	+	Y/N
osa-miR812k	miRbase		none	none	none	none	Y/Y
osa-miR812l	miRbase		none	none	none	none	Y/Y
Osa-miR812m	miRbase/PmiREN	/	Chr8	20574810	20574833	+	Y/Y
osa-miR1862f	miRbase		none	none	none	none	N/Y
Osa-miR1862g	miRbase/PmiREN	/	Chr4	20340401	20340422	-	N/Y
osa-miR3979-5p	miRbase		Chr11	19480162	19480181	+	Y/Y
osa-miR3979-3p	miRbase		Chr11	19480234	19480253	+	Y/Y
osa-miR3980a-5p	miRbase		none	none	none	none	N/N
osa-miR3980a-3p	miRbase		none	none	none	none	N/N
osa-miR3980b-5p	miRbase		none	none	none	none	N/N
osa-miR3980b-3p	miRbase		none	none	none	none	N/N
osa-miR812n-5p	miRbase		Chr8	14108258	14108281	-	Y/N
Osa-miR812n	miRbase/PmiREN	/	Chr8	14108083	14108106	-	Y/N