Chr:
Chr5
Start:
3877019
End:
3877042
Strand:
+
Sequence:
GACCGUAGAAACUAGCAUAGAAAA
Length:
24
precursor sequence:
CAUGGUGACCGUAGAAACUAGCAUAGAAAAAAGUAGAUAUCUCAAGUGACUUUGUUCAUUUACGUUGGGAUAGACAAGUAACUACCUUUUCUAUUUUAGUUUCUAUGGUCACUUUGGUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
2
NEP:
0.73%
LE_num:
LEP:
0.73%
ME_num:
MEP:
56.57%
HE_num:
HEP:
41.97%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.78
Avg Expression:
55.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 1.11781360144774 | 2.30662784246318e-06 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | -3.14943160496387 | 0.0290653840285839 |
| 3 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -2.14250486784348 | 0.0248349300566054 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.49742216815614 | 1.27004645234685e-06 |
| 5 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.22625378937709 | 0.000351123624610217 |
| 6 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.46772132233188 | 1.4297295138265e-07 |
| 7 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.25487612998601 | 0.00419846367871654 |
| 8 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.15569074053764 | 2.89588571174321e-05 |