Chr:
Chr11
Start:
7810261
End:
7810282
Strand:
-
Sequence:
UUCCCAAUGCCUCCCAUGCCUA
Length:
22
precursor sequence:
GUGAGUCGGGAAGAGGAAGAAAAGAGGGUCUAAGAGCAGUGGGCAUGGGAACAUGGAGGAAGAACAUGUACUUUUCUUCCCUCUAAAUUUAGAGGUUGAGAUUUGCUAAGCAUUUUUCCCAAUGCCUCCCAUGCCUACAGUUCUUAGGUACUCCUUCCCCUUCCUGUUGGCUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
49
NEP:
17.88%
LE_num:
LEP:
20.07%
ME_num:
MEP:
43.8%
HE_num:
HEP:
18.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.90
Avg Expression:
231.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -4.95600568918723 | 0.0408218321343244 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.18661311353111 | 0.00439598868919445 |
| 3 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.48376401474905 | 0.00125932536504197 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -2.04469999230841 | 0.0418226384423073 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -2.30325270117019 | 0.00465709816854972 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -2.25267718355941 | 0.000765617449057745 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.63720764192805 | 0.00586098761640011 |
| 8 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.53304558813789 | 0.0239513794820465 |