Chr:
Chr3
Start:
22741628
End:
22741651
Strand:
+
Sequence:
ACGGUAUCCCGUUCGGACAGGAUG
Length:
24
precursor sequence:
UAUUAGGGGAAUGCUACAGGACGGUAUCCCGUUCGGACAGGAUGAUACCUCAGAGGUAUCGUCUGAUACCCAGGUAUGCCAAUACCUAGUAGGUAUUGGCGAUACCUUGAGGUAUCAUCAUGUCCAAACGGGGUAUCAGCCGAUACCUUAGAUGAUCAUCCCGUCUGAACGGGAAACCGUCCCGUAGCAUUUCCCUAAUAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
24
NEP:
8.76%
LE_num:
LEP:
13.87%
ME_num:
MEP:
67.88%
HE_num:
HEP:
9.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.92
Avg Expression:
32.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.33110559505818 | 0.00557056144639752 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.4164591516002 | 0.0053713558179675 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.53903309050938 | 0.00662925022741238 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.69094032621257 | 5.80457385968774e-08 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.83891718809453 | 0.0229539032052319 |