Chr:
Chr12
Start:
4869465
End:
4869488
Strand:
+
Sequence:
UAGAAACUUGGCUGAUGCAUUACU
Length:
24
precursor sequence:
AGCAAUGCAUCAGUUAUGUUUCCUGGAUCAUUAAAUCAUUGAAUGUUUAUCUAGCACCAAUCUGCUGCUGAUCUGUUUGUAGUCAUGAAAAGCACUUUAUGAUCUGAAAGUGCUGGCUGUAUGCCAUGGUUUUCCCCAUUCUAUGGUUAUUAUUGCAAUCGUGACUUAAUAGUGAUGCAAUAAUCAGUAGUGGAUUCGUGUUGGCUCUACUUCGGGUUUAGGAUCAUAGUUAUUAGCUCUGAUACCAUGUUAUUGAUUUAGAAACUUGGCUGAUGCAUUACUUUUGGAGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
33
NEP:
12.04%
LE_num:
LEP:
9.85%
ME_num:
MEP:
66.42%
HE_num:
HEP:
11.68%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.92
Avg Expression:
25.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.11867302489911 | 0.0308147709623727 |
| 2 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 2.19058842018353 | 1.6247258962391e-07 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.39394955632318 | 0.0173775844471254 |