RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR2106_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

23768619

End:

23768639

Strand:

-

Sequence:

CCGAGGUUUUCUGGAUACAUU

Length:

21

precursor sequence:

UGCGAGAAGGAUGUUCCGAGAAUCUCGUACGCCGGUGAGGUUUCCCGUGAUCUGGCCGAGGUUUUCUGGAUACAUUCAACGCGGAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

72

NEP:

26.28%

LE_num:

82

LEP:

29.93%

ME_num:

113

MEP:

41.24%

HE_num:

7

HEP:

2.55%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.82

Avg Expression:

7.15

Tip: osa-miR2106_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h-2.953380677861110.00357036175533429