| SRR3140955 | leaf | "45C, 12h" | 0.60 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 0.82 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 3.10 | MC |
| SRR6810106 | panicle | panicle | 0.87 | MC |
| SRR7058097 | leaf | rice_mock | 0.58 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 1.59 | MC |
| SRR7058098 | leaf | rice_RSV | 1.52 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 3.84 | MC |
| SRR2154072 | seed | Rathuwee_seed | 0.24 | MC |
| SRR1061625 | panicle | Heat Stress | 0.16 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 8.28 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 0.29 | MC |
| SRR10704058 | leaf | Glyphosate | 0.59 | MC |
| SRR447128 | root | As(III) 20 uM | 0.86 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 1.20 | MC |
| SRR1013784 | flag_leaf | PA64s_FL | 0.41 | MC |
| SRR9070101 | shoot_base | WT_base | 1.48 | MC |
| SRR6810105 | panicle | panicle | 0.95 | MC |
| SRR089619 | panicle | control | 0.67 | MC |
| SRR447135 | shoot | As(III) 20 uM | 0.72 | MC |
| SRR447133 | shoot | As(III) 20 uM | 0.69 | MC |
| SRR447130 | root | As(III) 20 uM | 1.21 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 0.89 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 0.64 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 6.07 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 0.88 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 0.57 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 0.87 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 1.23 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 1.34 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 2.21 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 1.30 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 0.89 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 1.05 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 0.98 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 0.75 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.30 | MC |
| SRR447129 | root | As(III) 80 uM | 0.96 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 0.76 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 1.06 | MC |
| SRR7058096 | leaf | rice_mock | 0.56 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.47 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 1.14 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 4.10 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 2.30 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 2.57 | MC |
| SRR3140952 | leaf | "45C, 0h" | 4.47 | MC |
| SRR976171 | lamina_joint | wild type | 0.58 | MC |
| SRR4098208 | root | No treatment | 2.61 | MC |
| SRR4098209 | leaf | No treatment | 1.32 | MC |
| SRR9070100 | shoot_base | WT_base | 1.01 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.27 | MC |
| SRR3130366 | leaf | control 0 hour | 0.36 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 0.80 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 1.11 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 0.78 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 1.12 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 1.07 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 0.84 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 1.00 | MC |
| SRR2862364 | leaf | mock leaf cells | 0.49 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 0.78 | MC |
| SRR4098207 | panicle | No treatment | 0.36 | MC |
| SRR10704055 | leaf | CK | 0.56 | MC |
| SRR10704057 | leaf | CK | 0.65 | MC |
| SRR10704056 | leaf | CK | 0.56 | MC |
| SRR10704059 | leaf | Glyphosate | 0.54 | MC |
| SRR9070102 | shoot_base | WT_base | 1.56 | MC |
| SRR2646852 | panicle | FP | 0.49 | MC |
| SRR2646855 | panicle | SP | 0.41 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 5.16 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 8.72 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 10.42 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 7.50 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 2.86 | MC |
| SRR6365690 | seedling | Wild type | 0.70 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 8.20 | MC |
| SRR6365692 | panicle | Wild type | 0.82 | MC |
| SRR6365694 | panicle | Wild type | 0.31 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 0.60 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 1.65 | MC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 2.03 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 0.32 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 0.63 | MC |
| SRR1849784 | root | Control 120min | 1.04 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 3.37 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 2.83 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 1.56 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 2.38 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 0.76 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 0.75 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 0.90 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 1.15 | MC |
| SRR1061616 | panicle | Normal | 0.24 | MC |
| SRR1061614 | panicle | Normal | 0.21 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 2.67 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 1.86 | MC |
| SRR3140954 | leaf | "45C, 12h" | 1.08 | MC |
| SRR089621 | panicle | cold | 0.40 | MC |
| SRR089620 | panicle | drought | 1.10 | MC |
| SRR3140957 | leaf | "45C, 24h" | 2.68 | MC |
| SRR089622 | panicle | salt | 1.79 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 2.78 | MC |
| SRR2544786 | embryo | dry seed | 3.65 | MC |
| SRR4098172 | seedling | Cold (4C) | 1.44 | MC |
| SRR3140956 | leaf | "45C, 24h" | 0.55 | MC |
| SRR3140953 | leaf | "45C, 0h" | 6.10 | MC |
| SRR10956502 | panicle | WT | 0.48 | MC |
| SRR10956501 | panicle | WT | 0.49 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 0.33 | MC |
| SRR8258048 | leaf_sheath | R_bph | 0.76 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 1.80 | MC |
| SRR5940086 | panicle | Wild type | 0.26 | MC |