Chr:
Chr11
Start:
28933585
End:
28933608
Strand:
-
Sequence:
AAGUUUGGACUUAAAUUUGGUAAC
Length:
24
precursor sequence:
GCAGAUAUGAAAUAUAUUCUUACCAAAUUUCAAGUUCAAACUCAACUUUAUUUGUGAGAAUUUUUGUUUCUCUCAAAUGAAGUUAAGUUUGGACUUAAAUUUGGUAACAAUGUAUUUCAUAUCUACAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
43
NEP:
15.69%
LE_num:
LEP:
12.41%
ME_num:
MEP:
44.16%
HE_num:
HEP:
27.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.88
Avg Expression:
85.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 2.62464399101218 | 0.00424038379473297 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.62232426876491 | 0.000100512438288407 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.52091163090544 | 0.000549139931546901 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 3.02440874512053 | 0.00215373538490229 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 4.10851695086204 | 3.94375721899046e-05 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.80345696139728 | 0.0044228725489614 |