RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR2118p_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

7807471

End:

7807492

Strand:

-

Sequence:

UUCCCGAUGCCUCCCAUGCCUA

Length:

22

precursor sequence:

GGUCGACUUGUUUUGAUGUUUUCCCGAUGCCUCCCAUGCCUAUUGUCCUUAGGUGCUCCUUCCUCUUCCCUUUGGCACACAUAAUCAGCUUGGCAAUAGUGUAGAUGAUGAGGUCUUGAAGGCGAGUCGGGAAGAGGAUGAAAAAGAGCAUCUAAGAGCAUUGGGCAUGGGAACAUGGAGGAAAGCCUCGACCAUCAUUUCCCUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

182

NEP:

66.42%

LE_num:

31

LEP:

11.31%

ME_num:

20

MEP:

7.3%

HE_num:

41

HEP:

14.96%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.90

Avg Expression:

84.14

Tip: Osa-miR2118p_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17-1.936063417475370.0160029893704014
2PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17-1.670818374225470.0469681910203791