RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miR172b	PmiREN	Chr1	42923746	42923765	-	Y/N
Osa-miRN2219	PmiREN	Chr1	8729125	8729145	+	Y/N
Osa-miR393b	PmiREN	Chr4	34931961	34931981	-	Y/Y
Osa-miRN2335	PmiREN	Chr10	3687409	3687429	-	N/Y
Osa-miR1429	PmiREN	Chr8	2036951	2036974	-	N/N
Osa-miR11343a	PmiREN	Chr12	16169140	16169160	+	Y/N
Osa-miRN2232f	PmiREN	Chr9	5670106	5670126	-	Y/N
Osa-miRN2178a	PmiREN	Chr12	19677360	19677380	+	Y/N
Osa-miR169p	PmiREN	Chr8	7641337	7641357	+	Y/N
Osa-miRN2178c	PmiREN	Chr7	4112681	4112701	-	Y/N
Osa-miRN2178b	PmiREN	Chr12	25472900	25472920	+	Y/N
Osa-miR169f	PmiREN	Chr2	18558462	18558481	-	Y/N
Osa-miR169a	PmiREN	Chr3	35782429	35782449	+	Y/N
Osa-miRN2267b	PmiREN	Chr12	14534590	14534610	+	N/Y
Osa-miRN2283b	PmiREN	Chr11	24938808	24938828	+	Y/N
Osa-miRN2232a	PmiREN	Chr3	27624400	27624420	+	Y/N
Osa-miRN221f	PmiREN	Chr6	1095084	1095103	-	Y/N
Osa-miR3980a	PmiREN	Chr2	24319574	24319596	-	N/N
Osa-miR3980b	PmiREN	Chr2	24319574	24319596	-	N/N
Osa-miRN2325	PmiREN	Chr4	18612501	18612521	+	N/N
Osa-miR529a	PmiREN	Chr2	16227807	16227827	+	Y/N
Osa-miRN221a	PmiREN	Chr12	11288156	11288175	-	Y/N
Osa-miRN2232h	PmiREN	Chr3	24510613	24510633	-	Y/N
Osa-miR11339ad	PmiREN	Chr1	42099895	42099915	+	N/N
Osa-miRN2232i	PmiREN	Chr12	24283404	24283424	-	Y/Y
Osa-miRN2313	PmiREN	Chr12	21182132	21182152	-	N/Y
Osa-miRN2324	PmiREN	Chr4	17663211	17663231	+	N/Y
Osa-miR11339ag	PmiREN	Chr6	23690441	23690461	+	N/N
Osa-miRN2298b	PmiREN	Chr9	11105872	11105892	-	Y/N
Osa-miRN2314	PmiREN	Chr10	13966518	13966538	+	N/Y
Osa-miRN2298a	PmiREN	Chr6	15278119	15278139	-	Y/N
Osa-miRN2260a	PmiREN	Chr1	38771457	38771477	-	Y/N
Osa-miRN2276e	PmiREN	Chr8	13368415	13368435	-	Y/N
Osa-miRN2303b	PmiREN	Chr6	14075614	14075634	+	N/Y
Osa-miRN2260c	PmiREN	Chr7	1154950	1154970	-	Y/N
Osa-miRN221c	PmiREN	Chr3	31819312	31819331	-	Y/N
Osa-miR2275d	PmiREN	Chr8	3736892	3736912	-	Y/Y
Osa-miR2275e	PmiREN	Chr8	1204908	1204929	+	N/N
Osa-miR2275f	PmiREN	Chr8	4403927	4403947	-	N/N
Osa-miR2275g	PmiREN	Chr8	4404028	4404049	-	N/Y
Osa-miR2275a	PmiREN	Chr8	1205021	1205041	+	N/N
Osa-miR2275b	PmiREN	Chr8	1202505	1202525	+	N/N
Osa-miR2275c	PmiREN	Chr7	16719850	16719870	-	Y/Y
Osa-miR444c	PmiREN	Chr4	23053533	23053555	-	Y/N
Osa-miR444b	PmiREN	Chr2	22303630	22303652	-	Y/N
Osa-miR2275h	PmiREN	Chr8	4384923	4384944	-	N/Y
Osa-miR2275i	PmiREN	Chr7	16719646	16719666	-	Y/Y
Osa-miR444d	PmiREN	Chr2	30463327	30463349	-	Y/N
Osa-miRN2222	PmiREN	Chr12	13410165	13410185	+	Y/Y
Osa-miRN221b	PmiREN	Chr12	5611048	5611067	-	Y/N
Osa-miRN2276f	PmiREN	Chr8	3982102	3982122	-	Y/N
Osa-miRN2316	PmiREN	Chr11	20564657	20564677	+	N/N
Osa-miRN2329	PmiREN	Chr6	9654155	9654175	+	N/Y
Osa-miRN2276d	PmiREN	Chr5	14765998	14766018	-	Y/N
Osa-miR156k	PmiREN	Chr9	18289183	18289202	-	N/N
Osa-miR156j	PmiREN	Chr6	26554835	26554855	+	Y/Y
Osa-miR156h	PmiREN	Chr6	27388145	27388164	+	N/N
Osa-miR5143	PmiREN	Chr1	8417119	8417142	-	Y/N
Osa-miR156f	PmiREN	Chr8	21478232	21478252	+	Y/Y
Osa-miR156d	PmiREN	Chr2	4512974	4512994	-	Y/Y
Osa-miRN2303a	PmiREN	Chr6	13311859	13311879	+	N/Y
Osa-miRN2319	PmiREN	Chr12	24317901	24317921	+	Y/Y
Osa-miRN2283a	PmiREN	Chr11	4416847	4416867	+	Y/N
Osa-miRN2255	PmiREN	Chr11	27317151	27317171	+	N/Y
Osa-miRN2257	PmiREN	Chr11	1020771	1020791	-	Y/N
Osa-miRN2164a	PmiREN	Chr12	18944486	18944506	-	Y/N
Osa-miRN2259	PmiREN	Chr5	25503014	25503034	+	Y/N
Osa-miRN2258	PmiREN	Chr11	19306983	19307003	+	N/N
Osa-miR11343e	PmiREN	Chr3	2591086	2591107	-	N/N
Osa-miR11343d	PmiREN	Chr2	1861077	1861098	-	Y/N
Osa-miR11343c	PmiREN	Chr9	22883315	22883336	-	N/N
Osa-miR11343b	PmiREN	Chr7	25160299	25160320	-	N/N
Osa-miRN2317	PmiREN	Chr12	21907561	21907581	-	N/Y
Osa-miRN2164d	PmiREN	Chr2	34255126	34255146	-	Y/N
Osa-miRN2164e	PmiREN	Chr6	7075522	7075542	-	Y/N
Osa-miR5504	PmiREN	Chr10	17228178	17228197	-	Y/N
Osa-miR812d	PmiREN	Chr3	26459657	26459676	+	Y/N
Osa-miR812e	PmiREN	Chr3	14377303	14377322	-	Y/N
Osa-miR812a	PmiREN	Chr10	406243	406264	+	Y/N
Osa-miR812b	PmiREN	Chr2	1936345	1936370	-	Y/N
Osa-miR812c	PmiREN	Chr11	3604005	3604024	+	Y/N
Osa-miR812l	PmiREN	Chr10	13067089	13067110	-	Y/N
Osa-miR812o	PmiREN	Chr11	3914105	3914127	-	Y/N
Osa-miR812h	PmiREN	Chr3	1164963	1164986	-	Y/N
Osa-miR812k	PmiREN	Chr6	19697439	19697458	-	Y/N
Osa-miR812t	PmiREN	Chr9	16214838	16214859	+	Y/N
Osa-miR812u	PmiREN	Chr11	18534922	18534942	+	Y/N
Osa-miR812w	PmiREN	Chr11	26272551	26272572	-	Y/N
Osa-miR812q	PmiREN	Chr4	23192972	23192993	-	Y/N
Osa-miR812r	PmiREN	Chr8	21686719	21686740	-	Y/N
Osa-miR812s	PmiREN	Chr9	8642575	8642596	-	Y/N
Osa-miR812x	PmiREN	Chr4	12430353	12430374	+	Y/N
Osa-miR812y	PmiREN	Chr8	27821214	27821237	+	Y/N
Osa-miR812z	PmiREN	Chr5	20977759	20977780	-	Y/N
Osa-miR1122b	PmiREN	Chr2	977334	977354	-	N/N
Osa-miR1122a	PmiREN	Chr10	18022132	18022152	+	N/N
Osa-miR2122	PmiREN	Chr2	8715263	8715286	+	N/N
Osa-miR2120	PmiREN	Chr2	9175883	9175908	+	N/N
Osa-miR531a	PmiREN	Chr8	1220400	1220421	-	Y/N
Osa-miR531b	PmiREN	Chr1	833967	833989	-	Y/N