Browse: Expression Capacity

miRNAs Expression Capacity

total numbers: 1259

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

rows per page

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
Osa-miR10519_PmiREN	98	35.77%	24	8.76%	106	38.69%	46	16.79%	HCR
Osa-miR1122a_PmiREN	113	41.24%	89	32.48%	71	25.91%	1	0.36%	HCR
Osa-miR1122b_PmiREN	113	41.24%	89	32.48%	71	25.91%	1	0.36%	HCR
Osa-miR1130_PmiREN	206	75.18%	64	23.36%	4	1.46%	0	0.0%	MCR
Osa-miR11336_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11337a_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337b_PmiREN	78	28.47%	78	28.47%	118	43.07%	0	0.0%	MCR
Osa-miR11337c_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337d_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337e_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337f_PmiREN	72	26.28%	69	25.18%	127	46.35%	6	2.19%	HCR
Osa-miR11337g_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337h_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337i_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337j_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337k_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337l_PmiREN	62	22.63%	71	25.91%	135	49.27%	6	2.19%	HCR
Osa-miR11337m_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337n_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337o_PmiREN	26	9.49%	33	12.04%	209	76.28%	6	2.19%	HCR
Osa-miR11337p_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337q_PmiREN	37	13.5%	69	25.18%	168	61.31%	0	0.0%	MCR
Osa-miR11337r_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337s_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337t_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11339a_PmiREN	77	28.1%	45	16.42%	139	50.73%	13	4.74%	HCR
Osa-miR11339aa_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11339ab_PmiREN	149	54.38%	82	29.93%	43	15.69%	0	0.0%	MCR
Osa-miR11339ac_PmiREN	108	39.42%	107	39.05%	59	21.53%	0	0.0%	MCR
Osa-miR11339ad_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339ae_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339af_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339ag_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339b_PmiREN	155	56.57%	87	31.75%	32	11.68%	0	0.0%	MCR
Osa-miR11339c_PmiREN	115	41.97%	105	38.32%	54	19.71%	0	0.0%	MCR
Osa-miR11339d_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339e_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339f_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339g_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339h_PmiREN	60	21.9%	64	23.36%	150	54.74%	0	0.0%	MCR
Osa-miR11339i_PmiREN	21	7.66%	61	22.26%	191	69.71%	1	0.36%	HCR
Osa-miR11339j_PmiREN	177	64.6%	76	27.74%	21	7.66%	0	0.0%	MCR
Osa-miR11339k_PmiREN	21	7.66%	61	22.26%	191	69.71%	1	0.36%	HCR
Osa-miR11339l_PmiREN	141	51.46%	88	32.12%	45	16.42%	0	0.0%	MCR
Osa-miR11339m_PmiREN	102	37.23%	75	27.37%	91	33.21%	6	2.19%	HCR
Osa-miR11339n_PmiREN	105	38.32%	76	27.74%	87	31.75%	6	2.19%	HCR
Osa-miR11339o_PmiREN	141	51.46%	88	32.12%	45	16.42%	0	0.0%	MCR
Osa-miR11339p_PmiREN	20	7.3%	58	21.17%	195	71.17%	1	0.36%	HCR
Osa-miR11339q_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11339r_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11339s_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11339t_PmiREN	71	25.91%	67	24.45%	136	49.64%	0	0.0%	MCR
Osa-miR11339u_PmiREN	77	28.1%	45	16.42%	139	50.73%	13	4.74%	HCR
Osa-miR11339v_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11339w_PmiREN	155	56.57%	80	29.2%	39	14.23%	0	0.0%	MCR
Osa-miR11339x_PmiREN	138	50.36%	73	26.64%	63	22.99%	0	0.0%	MCR
Osa-miR11339y_PmiREN	155	56.57%	72	26.28%	47	17.15%	0	0.0%	MCR
Osa-miR11339z_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11341_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11342a_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11342b_PmiREN	175	63.87%	84	30.66%	15	5.47%	0	0.0%	MCR
Osa-miR11343a_PmiREN	100	36.5%	79	28.83%	95	34.67%	0	0.0%	MCR
Osa-miR11343b_PmiREN	39	14.23%	49	17.88%	185	67.52%	1	0.36%	HCR
Osa-miR11343c_PmiREN	39	14.23%	49	17.88%	185	67.52%	1	0.36%	HCR
Osa-miR11343d_PmiREN	32	11.68%	46	16.79%	196	71.53%	0	0.0%	MCR
Osa-miR11343e_PmiREN	75	27.37%	102	37.23%	97	35.4%	0	0.0%	MCR
Osa-miR1320_Both	62	22.63%	30	10.95%	118	43.07%	64	23.36%	HCR
Osa-miR1425_Both	1	0.36%	1	0.36%	5	1.82%	267	97.45%	HCR
Osa-miR1427_Both	113	41.24%	15	5.47%	124	45.26%	22	8.03%	HCR
Osa-miR1428a_PmiREN	162	59.12%	53	19.34%	59	21.53%	0	0.0%	MCR
Osa-miR1428b_PmiREN	116	42.34%	58	21.17%	83	30.29%	17	6.2%	HCR
Osa-miR1428c_PmiREN	250	91.24%	16	5.84%	8	2.92%	0	0.0%	MCR
Osa-miR1428d_PmiREN	252	91.97%	14	5.11%	8	2.92%	0	0.0%	MCR
Osa-miR1428e_Both	49	17.88%	36	13.14%	139	50.73%	50	18.25%	HCR
Osa-miR1428f_Both	102	37.23%	72	26.28%	81	29.56%	19	6.93%	HCR
Osa-miR1428g_Both	102	37.23%	72	26.28%	81	29.56%	19	6.93%	HCR
Osa-miR1429_PmiREN	36	13.14%	31	11.31%	115	41.97%	92	33.58%	HCR
Osa-miR1430_PmiREN	53	19.34%	62	22.63%	147	53.65%	12	4.38%	HCR
Osa-miR1431_Both	66	24.09%	39	14.23%	131	47.81%	38	13.87%	HCR
Osa-miR1432_PmiREN	16	5.84%	9	3.28%	67	24.45%	182	66.42%	HCR
Osa-miR1441_PmiREN	122	44.53%	103	37.59%	49	17.88%	0	0.0%	MCR
Osa-miR156a_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156b_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156c_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156d_PmiREN	0	0.0%	0	0.0%	3	1.09%	271	98.91%	HCR
Osa-miR156e_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156f_PmiREN	0	0.0%	0	0.0%	3	1.09%	271	98.91%	HCR
Osa-miR156g_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156h_PmiREN	74	27.01%	59	21.53%	119	43.43%	22	8.03%	HCR
Osa-miR156i_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156j_PmiREN	0	0.0%	0	0.0%	3	1.09%	271	98.91%	HCR
Osa-miR156k_PmiREN	66	24.09%	61	22.26%	123	44.89%	24	8.76%	HCR
Osa-miR156l_Both	53	19.34%	39	14.23%	161	58.76%	21	7.66%	HCR
Osa-miR156m_PmiREN	0	0.0%	0	0.0%	3	1.09%	271	98.91%	HCR
Osa-miR159a_PmiREN	2	0.73%	2	0.73%	65	23.72%	205	74.82%	HCR
Osa-miR159b_Both	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR159c_PmiREN	25	9.12%	44	16.06%	175	63.87%	30	10.95%	HCR
Osa-miR159d_PmiREN	25	9.12%	44	16.06%	175	63.87%	30	10.95%	HCR
Osa-miR159e_PmiREN	25	9.12%	44	16.06%	175	63.87%	30	10.95%	HCR
Osa-miR160a_Both	1	0.36%	2	0.73%	98	35.77%	173	63.14%	HCR
Osa-miR160b_Both	1	0.36%	1	0.36%	97	35.4%	175	63.87%	HCR
Osa-miR160c_Both	1	0.36%	1	0.36%	98	35.77%	174	63.5%	HCR
Osa-miR160d_Both	1	0.36%	2	0.73%	100	36.5%	171	62.41%	HCR
Osa-miR160e_Both	2	0.73%	2	0.73%	111	40.51%	159	58.03%	HCR
Osa-miR160f_Both	40	14.6%	25	9.12%	145	52.92%	64	23.36%	HCR
Osa-miR162a_Both	0	0.0%	0	0.0%	12	4.38%	262	95.62%	HCR
Osa-miR162b_Both	0	0.0%	4	1.46%	111	40.51%	159	58.03%	HCR
Osa-miR164a_Both	0	0.0%	0	0.0%	49	17.88%	225	82.12%	HCR
Osa-miR164b_Both	0	0.0%	0	0.0%	49	17.88%	225	82.12%	HCR
Osa-miR164c_Both	67	24.45%	72	26.28%	125	45.62%	10	3.65%	HCR
Osa-miR164d_PmiREN	14	5.11%	14	5.11%	112	40.88%	134	48.91%	HCR
Osa-miR164e_Both	54	19.71%	29	10.58%	135	49.27%	56	20.44%	HCR
Osa-miR164f_Both	0	0.0%	0	0.0%	49	17.88%	225	82.12%	HCR
Osa-miR166a_Both	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR166b_Both	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR166c_PmiREN	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR166d_Both	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR166e_Both	16	5.84%	24	8.76%	133	48.54%	101	36.86%	HCR
Osa-miR166f_Both	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR166g_Both	0	0.0%	0	0.0%	2	0.73%	272	99.27%	HCR
Osa-miR166h_Both	0	0.0%	0	0.0%	4	1.46%	270	98.54%	HCR
Osa-miR166i_PmiREN	0	0.0%	0	0.0%	95	34.67%	179	65.33%	HCR
Osa-miR166j_PmiREN	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR166k_Both	0	0.0%	1	0.36%	11	4.01%	262	95.62%	HCR
Osa-miR166l_Both	0	0.0%	1	0.36%	11	4.01%	262	95.62%	HCR
Osa-miR166m_PmiREN	0	0.0%	0	0.0%	12	4.38%	262	95.62%	HCR
Osa-miR167a_Both	0	0.0%	0	0.0%	17	6.2%	257	93.8%	HCR
Osa-miR167b_Both	0	0.0%	0	0.0%	17	6.2%	257	93.8%	HCR
Osa-miR167c_Both	0	0.0%	0	0.0%	17	6.2%	257	93.8%	HCR
Osa-miR167d_PmiREN	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR167e_Both	10	3.65%	16	5.84%	150	54.74%	98	35.77%	HCR
Osa-miR167f_PmiREN	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR167g_PmiREN	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR167h_PmiREN	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR167i_Both	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR167j_PmiREN	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR168_PmiREN	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR169a_PmiREN	44	16.06%	35	12.77%	171	62.41%	24	8.76%	HCR
Osa-miR169b_Both	21	7.66%	16	5.84%	137	50.0%	100	36.5%	HCR
Osa-miR169c_Both	11	4.01%	19	6.93%	130	47.45%	114	41.61%	HCR
Osa-miR169d_Both	233	85.04%	27	9.85%	14	5.11%	0	0.0%	MCR
Osa-miR169e_Both	18	6.57%	25	9.12%	209	76.28%	22	8.03%	HCR
Osa-miR169f_PmiREN	43	15.69%	32	11.68%	172	62.77%	27	9.85%	HCR
Osa-miR169g_Both	43	15.69%	32	11.68%	172	62.77%	27	9.85%	HCR
Osa-miR169h_Both	16	5.84%	36	13.14%	96	35.04%	126	45.99%	HCR
Osa-miR169i_Both	16	5.84%	36	13.14%	96	35.04%	126	45.99%	HCR
Osa-miR169j_Both	16	5.84%	36	13.14%	96	35.04%	126	45.99%	HCR
Osa-miR169k_Both	16	5.84%	36	13.14%	96	35.04%	126	45.99%	HCR
Osa-miR169l_Both	16	5.84%	36	13.14%	96	35.04%	126	45.99%	HCR
Osa-miR169m_Both	16	5.84%	37	13.5%	101	36.86%	120	43.8%	HCR
Osa-miR169n_Both	34	12.41%	35	12.77%	189	68.98%	16	5.84%	HCR
Osa-miR169o_Both	33	12.04%	37	13.5%	188	68.61%	16	5.84%	HCR
Osa-miR169p_PmiREN	11	4.01%	19	6.93%	130	47.45%	114	41.61%	HCR
Osa-miR170_PmiREN	1	0.36%	4	1.46%	59	21.53%	210	76.64%	HCR
Osa-miR171a_PmiREN	48	17.52%	49	17.88%	155	56.57%	22	8.03%	HCR
Osa-miR171b_Both	0	0.0%	0	0.0%	43	15.69%	231	84.31%	HCR
Osa-miR171c_Both	0	0.0%	0	0.0%	43	15.69%	231	84.31%	HCR
Osa-miR171d_Both	0	0.0%	0	0.0%	65	23.72%	209	76.28%	HCR
Osa-miR171e_Both	0	0.0%	0	0.0%	65	23.72%	209	76.28%	HCR
Osa-miR171f_Both	0	0.0%	0	0.0%	66	24.09%	208	75.91%	HCR
Osa-miR171g_PmiREN	112	40.88%	53	19.34%	86	31.39%	23	8.39%	HCR
Osa-miR171h_PmiREN	94	34.31%	56	20.44%	111	40.51%	13	4.74%	HCR
Osa-miR172a_Both	19	6.93%	27	9.85%	148	54.01%	80	29.2%	HCR
Osa-miR172b_PmiREN	70	25.55%	65	23.72%	110	40.15%	29	10.58%	HCR
Osa-miR172c_Both	167	60.95%	56	20.44%	51	18.61%	0	0.0%	MCR
Osa-miR172d_Both	19	6.93%	26	9.49%	149	54.38%	80	29.2%	HCR
Osa-miR1846a_PmiREN	51	18.61%	33	12.04%	173	63.14%	17	6.2%	HCR
Osa-miR1846b_Both	79	28.83%	63	22.99%	111	40.51%	21	7.66%	HCR
Osa-miR1846c_Both	77	28.1%	42	15.33%	147	53.65%	8	2.92%	HCR
Osa-miR1846d_Both	18	6.57%	24	8.76%	225	82.12%	7	2.55%	HCR
Osa-miR1846e_PmiREN	2	0.73%	7	2.55%	153	55.84%	112	40.88%	HCR
Osa-miR1846f_PmiREN	133	48.54%	69	25.18%	72	26.28%	0	0.0%	MCR
Osa-miR1846g_PmiREN	79	28.83%	63	22.99%	111	40.51%	21	7.66%	HCR
Osa-miR1846h_PmiREN	133	48.54%	69	25.18%	72	26.28%	0	0.0%	MCR
Osa-miR1850_PmiREN	12	4.38%	13	4.74%	130	47.45%	119	43.43%	HCR
Osa-miR1852_Both	142	51.82%	98	35.77%	34	12.41%	0	0.0%	MCR
Osa-miR1856_Both	77	28.1%	39	14.23%	129	47.08%	29	10.58%	HCR
Osa-miR1857_Both	37	13.5%	63	22.99%	167	60.95%	7	2.55%	HCR
Osa-miR1859_Both	62	22.63%	29	10.58%	125	45.62%	58	21.17%	HCR
Osa-miR1861a_PmiREN	59	21.53%	52	18.98%	158	57.66%	5	1.82%	HCR
Osa-miR1861b_Both	129	47.08%	45	16.42%	81	29.56%	19	6.93%	HCR
Osa-miR1861c_PmiREN	137	50.0%	75	27.37%	62	22.63%	0	0.0%	MCR
Osa-miR1861d_PmiREN	163	59.49%	55	20.07%	53	19.34%	3	1.09%	HCR
Osa-miR1861e_PmiREN	59	21.53%	52	18.98%	158	57.66%	5	1.82%	HCR
Osa-miR1861f_Both	129	47.08%	45	16.42%	81	29.56%	19	6.93%	HCR
Osa-miR1861g_PmiREN	184	67.15%	55	20.07%	31	11.31%	4	1.46%	HCR
Osa-miR1861h_Both	67	24.45%	40	14.6%	121	44.16%	46	16.79%	HCR
Osa-miR1861i_Both	129	47.08%	45	16.42%	81	29.56%	19	6.93%	HCR
Osa-miR1861j_Both	67	24.45%	40	14.6%	121	44.16%	46	16.79%	HCR
Osa-miR1861k_PmiREN	59	21.53%	52	18.98%	158	57.66%	5	1.82%	HCR
Osa-miR1861l_Both	129	47.08%	45	16.42%	81	29.56%	19	6.93%	HCR
Osa-miR1862a_PmiREN	163	59.49%	58	21.17%	36	13.14%	17	6.2%	HCR
Osa-miR1862b_Both	3	1.09%	6	2.19%	119	43.43%	146	53.28%	HCR
Osa-miR1862c_Both	3	1.09%	6	2.19%	114	41.61%	151	55.11%	HCR
Osa-miR1862d_Both	3	1.09%	0	0.0%	14	5.11%	257	93.8%	HCR
Osa-miR1862e_Both	3	1.09%	0	0.0%	85	31.02%	186	67.88%	HCR
Osa-miR1862f_PmiREN	53	19.34%	92	33.58%	115	41.97%	14	5.11%	HCR
Osa-miR1862g_Both	206	75.18%	28	10.22%	23	8.39%	17	6.2%	HCR
Osa-miR1862h_PmiREN	3	1.09%	0	0.0%	96	35.04%	175	63.87%	HCR
Osa-miR1863_PmiREN	33	12.04%	27	9.85%	182	66.42%	32	11.68%	HCR