Browse: Expression Capacity

miRNAs Expression Capacity

total numbers: 1259

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

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Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
Osa-miR10519_PmiREN	98	35.77%	24	8.76%	106	38.69%	46	16.79%	HCR
Osa-miR1122a_PmiREN	113	41.24%	89	32.48%	71	25.91%	1	0.36%	HCR
Osa-miR1122b_PmiREN	113	41.24%	89	32.48%	71	25.91%	1	0.36%	HCR
Osa-miR1130_PmiREN	206	75.18%	64	23.36%	4	1.46%	0	0.0%	MCR
Osa-miR11336_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11337a_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337b_PmiREN	78	28.47%	78	28.47%	118	43.07%	0	0.0%	MCR
Osa-miR11337c_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337d_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337e_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337f_PmiREN	72	26.28%	69	25.18%	127	46.35%	6	2.19%	HCR
Osa-miR11337g_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337h_PmiREN	84	30.66%	81	29.56%	109	39.78%	0	0.0%	MCR
Osa-miR11337i_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337j_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337k_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337l_PmiREN	62	22.63%	71	25.91%	135	49.27%	6	2.19%	HCR
Osa-miR11337m_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337n_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337o_PmiREN	26	9.49%	33	12.04%	209	76.28%	6	2.19%	HCR
Osa-miR11337p_PmiREN	24	8.76%	30	10.95%	213	77.74%	7	2.55%	HCR
Osa-miR11337q_PmiREN	37	13.5%	69	25.18%	168	61.31%	0	0.0%	MCR
Osa-miR11337r_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337s_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11337t_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11339a_PmiREN	77	28.1%	45	16.42%	139	50.73%	13	4.74%	HCR
Osa-miR11339aa_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11339ab_PmiREN	149	54.38%	82	29.93%	43	15.69%	0	0.0%	MCR
Osa-miR11339ac_PmiREN	108	39.42%	107	39.05%	59	21.53%	0	0.0%	MCR
Osa-miR11339ad_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339ae_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339af_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339ag_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339b_PmiREN	155	56.57%	87	31.75%	32	11.68%	0	0.0%	MCR
Osa-miR11339c_PmiREN	115	41.97%	105	38.32%	54	19.71%	0	0.0%	MCR
Osa-miR11339d_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339e_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339f_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339g_PmiREN	109	39.78%	105	38.32%	60	21.9%	0	0.0%	MCR
Osa-miR11339h_PmiREN	60	21.9%	64	23.36%	150	54.74%	0	0.0%	MCR
Osa-miR11339i_PmiREN	21	7.66%	61	22.26%	191	69.71%	1	0.36%	HCR
Osa-miR11339j_PmiREN	177	64.6%	76	27.74%	21	7.66%	0	0.0%	MCR
Osa-miR11339k_PmiREN	21	7.66%	61	22.26%	191	69.71%	1	0.36%	HCR
Osa-miR11339l_PmiREN	141	51.46%	88	32.12%	45	16.42%	0	0.0%	MCR
Osa-miR11339m_PmiREN	102	37.23%	75	27.37%	91	33.21%	6	2.19%	HCR
Osa-miR11339n_PmiREN	105	38.32%	76	27.74%	87	31.75%	6	2.19%	HCR
Osa-miR11339o_PmiREN	141	51.46%	88	32.12%	45	16.42%	0	0.0%	MCR
Osa-miR11339p_PmiREN	20	7.3%	58	21.17%	195	71.17%	1	0.36%	HCR
Osa-miR11339q_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11339r_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR