Browse: Expression Capacity

miRNAs Expression Capacity

total numbers: 1259

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

rows per page

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
Osa-miR11339s_PmiREN	93	33.94%	87	31.75%	94	34.31%	0	0.0%	MCR
Osa-miR11339t_PmiREN	71	25.91%	67	24.45%	136	49.64%	0	0.0%	MCR
Osa-miR11339u_PmiREN	77	28.1%	45	16.42%	139	50.73%	13	4.74%	HCR
Osa-miR11339v_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11339w_PmiREN	155	56.57%	80	29.2%	39	14.23%	0	0.0%	MCR
Osa-miR11339x_PmiREN	138	50.36%	73	26.64%	63	22.99%	0	0.0%	MCR
Osa-miR11339y_PmiREN	155	56.57%	72	26.28%	47	17.15%	0	0.0%	MCR
Osa-miR11339z_PmiREN	143	52.19%	89	32.48%	42	15.33%	0	0.0%	MCR
Osa-miR11341_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11342a_PmiREN	41	14.96%	69	25.18%	164	59.85%	0	0.0%	MCR
Osa-miR11342b_PmiREN	175	63.87%	84	30.66%	15	5.47%	0	0.0%	MCR
Osa-miR11343a_PmiREN	100	36.5%	79	28.83%	95	34.67%	0	0.0%	MCR
Osa-miR11343b_PmiREN	39	14.23%	49	17.88%	185	67.52%	1	0.36%	HCR
Osa-miR11343c_PmiREN	39	14.23%	49	17.88%	185	67.52%	1	0.36%	HCR
Osa-miR11343d_PmiREN	32	11.68%	46	16.79%	196	71.53%	0	0.0%	MCR
Osa-miR11343e_PmiREN	75	27.37%	102	37.23%	97	35.4%	0	0.0%	MCR
Osa-miR1320_Both	62	22.63%	30	10.95%	118	43.07%	64	23.36%	HCR
Osa-miR1425_Both	1	0.36%	1	0.36%	5	1.82%	267	97.45%	HCR
Osa-miR1427_Both	113	41.24%	15	5.47%	124	45.26%	22	8.03%	HCR
Osa-miR1428a_PmiREN	162	59.12%	53	19.34%	59	21.53%	0	0.0%	MCR
Osa-miR1428b_PmiREN	116	42.34%	58	21.17%	83	30.29%	17	6.2%	HCR
Osa-miR1428c_PmiREN	250	91.24%	16	5.84%	8	2.92%	0	0.0%	MCR
Osa-miR1428d_PmiREN	252	91.97%	14	5.11%	8	2.92%	0	0.0%	MCR
Osa-miR1428e_Both	49	17.88%	36	13.14%	139	50.73%	50	18.25%	HCR
Osa-miR1428f_Both	102	37.23%	72	26.28%	81	29.56%	19	6.93%	HCR
Osa-miR1428g_Both	102	37.23%	72	26.28%	81	29.56%	19	6.93%	HCR
Osa-miR1429_PmiREN	36	13.14%	31	11.31%	115	41.97%	92	33.58%	HCR
Osa-miR1430_PmiREN	53	19.34%	62	22.63%	147	53.65%	12	4.38%	HCR
Osa-miR1431_Both	66	24.09%	39	14.23%	131	47.81%	38	13.87%	HCR
Osa-miR1432_PmiREN	16	5.84%	9	3.28%	67	24.45%	182	66.42%	HCR
Osa-miR1441_PmiREN	122	44.53%	103	37.59%	49	17.88%	0	0.0%	MCR
Osa-miR156a_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156b_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156c_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156d_PmiREN	0	0.0%	0	0.0%	3	1.09%	271	98.91%	HCR
Osa-miR156e_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156f_PmiREN	0	0.0%	0	0.0%	3	1.09%	271	98.91%	HCR
Osa-miR156g_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156h_PmiREN	74	27.01%	59	21.53%	119	43.43%	22	8.03%	HCR
Osa-miR156i_Both	0	0.0%	0	0.0%	18	6.57%	256	93.43%	HCR
Osa-miR156j_PmiREN	0	0.0%	0	0.0%	3	1.09%	271	98.91%	HCR
Osa-miR156k_PmiREN	66	24.09%	61	22.26%	123	44.89%	24	8.76%	HCR
Osa-miR156l_Both	53	19.34%	39	14.23%	161	58.76%	21	7.66%	HCR
Osa-miR156m_PmiREN	0	0.0%	0	0.0%	3	1.09%	271	98.91%	HCR
Osa-miR159a_PmiREN	2	0.73%	2	0.73%	65	23.72%	205	74.82%	HCR
Osa-miR159b_Both	0	0.0%	0	0.0%	0	0.0%	274	100.0%	HCR
Osa-miR159c_PmiREN	25	9.12%	44	16.06%	175	63.87%	30	10.95%	HCR
Osa-miR159d_PmiREN	25	9.12%	44	16.06%	175	63.87%	30	10.95%	HCR
Osa-miR159e_PmiREN	25	9.12%	44	16.06%	175	63.87%	30	10.95%	HCR
Osa-miR160a_Both	1	0.36%	2	0.73%	98	35.77%	173	63.14%	HCR